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Table 1 Profile of the 28 SNPs

From: Evidence of recent natural selection on the Southeast Asian deletion (--SEA) causing α-thalassemia in South China

    

Derived-allele frequency

P value for HWE test in CRS(Nc = 149)

No.

SNP ID

Positiona

Polymorphismb

Carrier (Nc = 76)

Normal (Nc = 138)

 

1

rs2541593

43423

A/C

0.217

0.362

0.858

2

rs216606

57194

G/A

0.072

0.087

0.533

3

rs3785288

67230

T/C

0.138

0.261

0.849

4

rs2541622

76258

G/A

0.138

0.268

0.981

5

rs216091

97141

G/A

0.125

0.214

0.050e

6

rs2238368

110328

C/T

0.138

0.279

0.908

7

rs2562164

116743

G/A

0.289

0.529

0.112

8

rs2562185

132314

G/A

0.658

0.377

0.328

9

rs77308790d

135020

C/T

0.493

0.091

0.180

10

rs6600143

141389

A/C

0.132

0.264

0.605

11

rs2858925

148039

C/G

0.645

0.341

0.198

12

rs3760053d

151243

T/G

0.520

0.098

0.319

13

rs1211375

180281

C/A

0.757

0.482

0.774

14

rs3918352

187889

A/G

0.158

0.348

0.949

15

rs1203974

217459

A/G

0.704

0.464

0.541

16

rs11248914

233563

C/T

0.243

0.388

0.909

17

rs2252214

237751

C/T

0.171

0.341

0.662

18

rs4374177

246244

A/G

0.171

0.355

0.764

19

rs2239739

251854

A/G

0.730

0.457

0.918

20

rs9940585

262935

T/C

0.632

0.308

0.417

21

rs2685126

264053

G/A

0.211

0.319

0.967

22

rs214247

289222

T/C

0.066

0.163

0.166

23

rs1981492

296690

G/A

0.112

0.236

0.996

24

rs11648673

317795

G/A

0.053

0.127

0.155

25

rs1573733

363556

G/A

0.546

0.290

0.309

26

rs4984666

386363

A/C

0.224

0.420

0.409

27

rs1698232

425556

T/C

0.184

0.377

0.379

28

rs3785301

456923

G/T

0.717

0.551

0.426

  1. a Positions in chromosome 16 are based on NCBI, build 36.3.
  2. b Alleles on the positive strand; ancestral state is named first.
  3. c Number of individuals.
  4. d These two SNPs indicate a hitchhiking effect.
  5. e P < 0.05 in the Hardy-Weinberg equilibrium test.
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BMC Ecology and Evolution

ISSN: 2730-7182

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