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Table 3 Diversity statistics and neutrality tests of L0d/k subgroups and comparative haplogroups

From: MtDNA control region variation affirms diversity and deep sub-structure in populations from southern Africa

Group N seq N Ht Hd π θS W-θS Ne Tajima’s D Tajima's D p-value Fs Fs p-value R2 R2 p-value
L0d 317 111 0.962 0.00732 0,01419 15.342 2730 −1.45547 0.028* −33.984 <0.001*** 0.0421 0.069
L0d1a 37 21 0.964 0.00436 0.00584 6.468 1151 −0.84168 0.210 −8.871 0.001** 0.0849 0.120
L0d1b 79 29 0.926 0.00279 0.00551 6.072 1081 −1.51856 0.040* −17.250 <0.001*** 0.0488 0.040*
L0d1c 59 12 0.760 0.00248 0.00388 4.305 766 −1.09831 0.136 −1.628 0.273 0.0714 0.186
L0d2a 91 27 0.722 0.00110 0.00463 5.116 910 −2.29659 <0.001*** −23.082 <0.001*** 0.0240 0.005**
L0d2b 6 4 0.867 0.00458 0.00393 4.380 779 1.03370 0.864 1.229 0.701 0.2429 0.738
L0d2c 17 6 0.588 0.00129 0.00239 2.662 474 −1.65319 0.032* −1.475 0.134 0.1135 0.128
L0d2d 3 2 0.667 0.00357 0.00359 4.000 712 na na na na na na
L0d3 21 7 0.710 0.00121 0.00124 1.390 247 −0.08107 0.511 −1.287 0.170 0.1327 0.432
L0dx 4 3 0.833 0.00238 0.00244 2.727 485 na na na na na na
L0k1 31 5 0.738 0.00110 0.00089 1.001 178 0.58176 0.742 −0.044 0.518 0.1522 0.721
L0a 21 12 0.905 0.00590 0.00526 5.837 1039 0.30935 0.676 −1.317 0.290 0.1475 0.725
L2a 29 10 0.852 0.00332 0.00367 4.074 725 −0.29380 0.430 −0.739 0.382 0.1153 0.472
L3d 20 6 0.558 0.00281 0.00253 2.819 502 0.41429 0.700 2.092 0.849 0.1506 0.662
L3e 22 16 0.957 0.00575 0.00545 6.035 1074 0.08399 0.601 −5.350 0.056 0.1345 0.611
M 19 18 0.994 0.00620 0.01340 14.592 2596 −2.17227 0.004** −11.280 <0.001*** 0.0462 <0.001***
R 38 35 0.994 0.00793 0.01702 19.326 3439 −1.93058 0.010** −27.889 <0.001*** 0.0466 <0.001***
  1. * p-value < 0.05.
  2. ** p-value < 0.005.
  3. *** p-value < 0.001.