Name | Region of DNA/FISH probe | Primer sequence (5′to3′) | Ref. |
---|---|---|---|
28S A | 3′ end of the 28S rDNA involving the regions A and B, F primer | AAA CTC TGG TGG AGG TCC GT | [61] |
28S B | Internally nested in the regions A and B of the 28S rDNA, R primer | CTT ACC AAA AGT GGC CCA CTA | [61] |
28S C1 | 5′ end of the 28S rDNA adjacent to the ITS2, F primer | ACC CGC TGA ATT TAA GCA T | [62] |
28S D2 | Internally nested in the region C3 involving D2, C2, D1, C1, R primer | TCC GTG TTT CAA GAC GGG | [63] |
ITS1 | 3′ end of the 18S rDNA adjacent to the ITS1, F primer | TCC GTA GGT GAA CCT GCG G | [64] |
ITS2 | 3′ end of the 5.8S rDNA adjacent to the ITS2, R primer | GCT GCG TTC TTC ATC GAT GC | [64] |
ITS3 | 5′ end of the 5.8S rDNA adjacent to the ITS1, F primer | GCA TCG ATG AAG AAC GCA GC | [64] |
ITS4 | 5′ end of the 28S rDNA adjacent to the ITS2, R primer | TCC TCC GCT TAT TGA TAT GC | [64] |
NS1 | 5′ end of the 18S rDNA F primer | GTA GTC ATA TGC TTG TCT | [64] |
NS2 | 18Â S rDNA R primer | GGC TGC TGG CAC CAG ACT TGC | [64] |
NS3 | 18Â S rDNA F primer | GCA AGT CTG GTG CCA GCA GCC | [64] |
NS4 | 18Â S rDNA R primer | CTT CCG TCA ATT CCT TTA AG | [64] |
NS5 | 18Â S rDNA F primer | AAC TTA AAG GAA TTG ACG GAA G | [64] |
NS6 | 18Â S rDNA R primer | GCA TCA CAG ACC TGT TAT TGC CTC | [64] |
NS7 | 18Â S rDNA F primer | GAG GCA ATA ACA GGT CTG TGA TGC | [64] |
NS8 | 3′ end of the 18S rDNA R primer | TCC GCA GGT TCA CCT ACG GA | [64] |
RTX1F1 | Rex1 F primer | TTC TCC AGT GCC TTC AAC ACC | [28] |
RTX1R3 | Rex1 R primer | TCC CTC AGC AGA AAG AGT CTG CTC | [28] |
RTX3F1 | Rex3 F primer | TAC GGA GAA AAC CCA TTT CG | [65] |
RTX3F2 | Rex3 F primer | AAC ACC TTG GCT GCG CCT AG | [65] |
RTX3F3 | Rex3 F primer | CGG TGA YAA AGG GCA GCC CTG | [28] |
RTX3R1 | Rex3 R primer | AAA GTT CCT CGG TGG CAA GG | [65] |
RTX3R2 | Rex3 R primer | CCR GGG GTG GAT GAR RTC CGC CC | [65] |
RTX3R3 | Rex3 R primer | TGG CAG ACN GGG GTG GTG GT | [28] |
RTX6F | Rex6 F primer | TAA AGC ATA CAT GGA GCG CCA C | [28] |
RTX6R | Rex6 R primer | GGT CCT CTA CCA GAG GCC TGG G | [28] |