Table 1 Number of ERVs detected de novo by LTRHarvest and LTRDigest in each Bos species and their features
From: Evolutionary history of bovine endogenous retroviruses in the Bovidae family
B. taurus | B. indicus | B. grunniens | |
|---|---|---|---|
Elements detected | 87340 | 55430 | 43624 |
Elements with PPT | 22002 | 14153 | 10285 |
Elements with PBS | 5154 | 3279 | 2963 |
Elements with retroviral genes or regions of retroviral genes. | 1532 | 771 | 519 |
- With gag | 675 | 316 | 199 |
- With protease | 701 | 338 | 186 |
- With pol | 1324 | 685 | 440 |
- With RT | 834 | 417 | 240 |
- With IN | 927 | 475 | 315 |
- With RNaseH | 816 | 429 | 228 |
- With env | 537 | 246 | 172 |
- With other | 348 | 132 | 81 |
LTR-gag-pol-env-LTR | 251 | 113 | 75 |
LTR-gag-pol-LTR | 334 | 160 | 91 |
LTR-gag-env-LTR | 13 | 8 | 9 |
LTR-pol-env-LTR | 191 | 95 | 61 |
LTR-gag-LTR | 77 | 35 | 24 |
LTR-pol-LTR | 548 | 317 | 213 |
LTR-env-LTR | 82 | 30 | 27 |