| Species (genome assembly version) | Sequence names in phylogenetic analyses a | Type b | Chromosome, linkage group, or genomic scaffold | Loc. (Mb) |
---|---|---|---|---|---|
Sarcopterygians | |||||
Mammals | Human | Hsa X OPN1LW | LWS | X | 153.41 |
 | (GRCh37) | Hsa X OPN1MW2 | LWS | X | 153.49 |
 |  | Hsa X OPN1MW | LWS | X | 153.45 |
 |  | Hsa 3 RHO | RH1 | 3 | 129.25 |
 |  | Hsa 7 OPN1SW | SWS1 | 7 | 128.41 |
 | Mouse | Mmu X Opn1mw | LWS | X | 71.37 |
 | (NCBIM37) | Mmu 6 Rho | RH1 | 6 | 115.88 |
 |  | Mmu 6 Opn1sw | SWS1 | 6 | 29.33 |
 | Grey short-tailed opossum | Mdo X LWS | LWS | X | 14.66 |
 | (MonDom5) | Mdo 6 RH1 | RH1 | 6 | 246.61 |
 |  | Mdo 8 SWS1 | SWS1 | 8 | 188.61 |
Birds | Chicken | Gga LWS | LWS | c | Â |
 | (WASHUC2) | Gga 12 RH1 | RH1 | 12 | 20.16 |
 |  | Gga 26 RH2 | RH2 | 26 | 4.38 |
 |  | Gga SWS1 | SWS1 | c |  |
 |  | Gga SWS2 | SWS2 | c |  |
Non-avian reptiles | Carolina anole lizard | Aca 2 LWS | LWS | 2 | 88.66 |
 | (AnoCar2.0) | Aca RH1 | RH1 | GL343273.1 | 0.64 |
 |  | Aca 4 RH2 | RH2 | 4 | 122.81 |
 |  | Aca SWS1 | SWS1 | GL343828.1 | 0.11 |
 |  | Aca 2 SWS2 | SWS2 | 2 | 88.63 |
Amphibians | Western clawed frog | Xtr opn1lw | LWS | GL172911.1 | 0.21 |
 | (JGI_4.2) | Xtr rho | RH1 | GL172832.1 | 1.64 |
 |  | Xtr opn1sw | SWS1 | GL173116.1 | 0.61 |
 |  | Xtr SWS2 | SWS2 | GL172911.1 | 0.22 |
Coelacanths | Coelacanth | Lch RH1 | RH1 | JH126975.1 | 0.80 |
 | (LatCha1) | Lch RH2 | RH2 | JH126819.1 | 1.63 |
 |  | Lch SWS2 | SWS2 | JH127263.1 | 0.54 |
Actinopterygians | |||||
Holostean fishes | Spotted gar | Loc LG1 LWS | LWS | LG1 | 2.61 |
 | (LepOcu1) | Loc LG5 RH1-1d | RH1 | LG5 | 40.45 |
 |  | Loc LG5 RH1-2 | RH1 | LG5 | 23.74 |
 |  | Loc LG3 RH2 | RH2 | LG3 | 36.55 |
 |  | Loc LG8 SWS1-1e | SWS1 | LG8 | 10.39 |
 |  | Loc LG8 SWS1-2d | SWS1 | LG8 | 10.40 |
 |  | Loc LG1 SWS2 | SWS2 | LG1 | 2.62 |
Teleost fishes | Zebrafish | Dre 11 opn1lw1 | LWS | 11 | 26.41 |
 | (Zv9) | Dre 11 opn1lw2 | LWS | 11 | 26.41 |
 |  | Dre exorh | RH1 | Zv9_NA986 | 0.130 Kb |
 |  | Dre 8 rho | RH1 | 8 | 55.71 |
 |  | Dre 11 rhol | RH1 | 11 | 19.52 |
 |  | Dre 6 opn1mw1 | RH2 | 6 | 41.11 |
 |  | Dre 6 opn1mw2 | RH2 | 6 | 41.12 |
 |  | Dre 6 opn1mw3 | RH2 | 6 | 41.12 |
 |  | Dre 6 opn1mw4 | RH2 | 6 | 41.13 |
 |  | Dre 4 opn1sw1 | SWS1 | 4 | 12.64 |
 |  | Dre 11 opn1sw2 | SWS2 | 11 | 26.41 |
 | Three-spined stickleback | Gac XVII LWS | LWS | XVII | 10.63 |
 | (BROADS1) | Gac XII RH1-1d,e | RH1 | XII | 1.18 |
 |  | Gac XII RH1-2 | RH1 | XII | 0.81 |
 |  | Gac RH2-1 | RH2 | scaffold 27 | 4.15 |
 |  | Gac RH2-2 | RH2 | scaffold 27 | 4.16 |
 |  | Gac SWS1 | SWS1 | scaffold 90 | 0.46 |
 |  | Gac XVII SWS2 | SWS2 | XVII | 10.62 |
 | Medaka | Ola 5 LWS-1 | LWS | 5 | 27.02 |
 | (MEDAKA1) | Ola 5 LWS-2 | LWS | 5 | 27.01 |
 |  | Ola 7 RH1-1 | RH1 | 7 | 17.43 |
 |  | Ola 7 RH1-2 | RH1 | 7 | 17.10 |
 |  | Ola RH2-1 | RH2 | ultracontig 62 | 1.61 |
 |  | Ola RH2-2 | RH2 | ultracontig 62 | 1.62 |
 |  | Ola RH2-3 | RH2 | ultracontig 62 | 1.62 |
 |  | Ola SWS1 | SWS1 | scaffold 1021 | 0.04 |
 |  | Ola 5 SWS2-1 | SWS2 | 5 | 27.01 |
 |  | Ola 5 SWS2-2 | SWS2 | 5 | 27.00 |
 | Spotted green pufferfish | Tni 11 LWS | LWS | 11 | 10.12 |
 | (TETRAODON8) | Tni 9 RH1-1 | RH1 | 9 | 6.68 |
 |  | Tni 9 RH1-2 | RH1 | 9 | 6.48 |
 |  | Tni 11 RH2 | RH2 | 11 | 5.97 |
 |  | Tni 11 SWS2 | SWS2 | 11 | 10.12 |
Cyclostomes | |||||
Lampreys | Pouched lamprey | Gau Lws | LWS | Â | Â |
 |  | Gau RhA | RH1 |  |  |
 |  | Gau RhB | RH2 |  |  |
 |  | Gau Sws1 | SWS1 |  |  |
 |  | Gau Sws2 | SWS2 |  |  |