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Table 1 Haplotypic frequencies, allelic richness, and heterozygosities of MHC class I loci in 6 wild panda populations

From: Patterns of genetic differentiation at MHC class I genes and microsatellites identify conservation units in the giant panda

   Population
Locus Haplotype QLI (17) MSH (19) QLA (21) DXL (19) XXL (22) LSH (22)
Aime-C 01 / 0.026 0.016 0.100 / 0.043
  02 0.368 0.250 0.250 0.067 0.107 0.357
  03 0.079 0.355 0.375 0.200 0.196 0.143
  04 / / 0.031 / 0.018 /
  05 0.395 0.066 0.094 0.100 0.107 0.071
  06 0.079 0.105 0.109 0.467 0.107 0.157
  07 0.026 0.118 0.063 0.067 0.375 0.114
  08 0.053 0.079 0.063 / 0.089 0.071
  09 / / / / / 0.043
  AR 5.736 6.498 7.018 6.000 6.497 7.519
  H O 0.684 0.737 0.781 0.933 0.821 0.800
  H E 0.711 0.785 0.804 0.738 0.792 0.812
Aime-F 01 1.000 1.000 1.000 1.000 1.000 1.000
  AR / / / / / /
  H O / / / / / /
  H E / / / / / /
Aime-I 01 0.125 0.134 0.212 0.250 0.290 0.256
  02 0.438 0.500 0.455 0.219 0.210 0.207
  03 / 0.073 0.091 0.125 0.129 0.098
  04 0.188 0.232 0.167 0.375 0.113 0.256
  05 / 0.061 0.030 0.031 0.145 0.073
  06 0.146 / / / 0.097 0.073
  07 0.104 / 0.045 / 0.016 0.037
  AR 4.993 4.842 5.528 4.938 6.458 6.613
  H O 0.626 0.732 0.758 0.625 0.774* 0.829
  H E 0.741 0.734 0.777 0.756 0.832 0.814
Aime-L 01 0.021 0.012 0.121 0.094 0.032 0.049
  02 0.167 0.226 0.303 0.219 0.226 0.232
  03 0.292 0.262 0.273 0.188 0.210 0.244
  04 0.146 0.286 0.106 0.156 0.113 0.244
  05 / 0.024 0.030 0.031 0.065 /
  06 0.375 0.190 0.167 0.250 0.129 0.171
  07 / / / 0.063 0.226 0.061
  AR 4.624 4.946 5.69 6.935 6.663 5.749
  H O 0.792* 0.810 0.788 0.938 0.774 0.731
  H E 0.740 0.789 0.803 0.843 0.824 0.802
Total AR 5.118 5.429 6.079 5.958 6.539 6.627
  H O 0.701 0.760 0.776 0.832 0.790 0.787
  H E 0.731 0.769 0.795 0.779 0.816 0.809
  1. Notes: The predominant haplotype of each population is marked in bold. The figures in parentheses are the number of haplotypes in each population. Asterisks denote significant deviations from HWE (P < 0.05).