From: RUNX2 tandem repeats and the evolution of facial length in placental mammals
Order | Species | Common name | RUNX2 sequence source | Q | A | QA ratio | Nose/Oc-Pat* | Nose/CBL* | Face/Oc-Pat* | Face/CBL* |
---|---|---|---|---|---|---|---|---|---|---|
Euarchontoglires | ||||||||||
Primates | Callithrix jacchus | Common marmoset | ENSCJAG00000012153 | 21 | 17 | 1.24 | 0.18 | 0.11 | 0.41 | 0.25 |
Gorilla gorilla | Western gorilla | ENSGGOG00000012890 | 22 | 17 | 1.29 | 0.33 | 0.16 | 0.98 | 0.47 | |
Homo sapiens | Human | ENSG00000124813 | 23 | 17 | 1.35 | 0.26 | 0.13 | 0.88 | 0.46 | |
Macaca mulatta | Rhesus macaque | ENSMMUG00000019819 | 24 | 17 | 1.41 | 0.37 | 0.17 | 0.99 | 0.47 | |
Microcebus murinus | Gray mouse lemur | ENSMICG00000012251 | 20 (14Q H 6Q) | 16 | 1.25 | 0.55 | 0.30 | 0.64 | 0.35 | |
Nomascus leucogenys | White-cheeked gibbon | BLAST: wgs read 1906216859 | 23 | 17 | 1.35 | 0.21 | 0.11 | 0.58 | 0.31 | |
Otolemur garnettii | Small-eared galago | ENSOGAG00000003900 | 21 | 17 | 1.24 | 0.45 | 0.25 | 0.57 | 0.31 | |
Pan troglodytes | Chimpanzee | ENSPTRG00000018228 | 25 | 17 | 1.47 | 0.24 | 0.12 | 0.98 | 0.47 | |
Papio hamadryas | Hamadryas baboon | BLAST: wgs read 1986882716 | 24 | 17 | 1.41 | 0.85 | 0.34 | 1.57 | 0.63 | |
Pongo abelii | Sumatran orangutan | ENSPPYG00000016664 | 23 | 17 | 1.35 | 0.19 | 0.10 | 0.89 | 0.47 | |
Rodentia | Cavia porcellus | Guinea-pig | BLAST: wgs read 1611098943 | 18 | 17 | 1.06 | 0.82 | 0.39 | 1.01 | 0.48 |
Mus musculus | House mouse | ENSMUSG00000039153 | 29 | 18 | 1.61 | 0.75 | 0.34 | 0.81 | 0.36 | |
Rattus norvegicus | Brown rat | ENSRNOG00000020193 | 31 | 17 | 1.82 | 0.82 | 0.34 | 0.97 | 0.41 | |
Spermophilus tridecemlineatus | Thirteen-lined ground squirrel | ENSSTOG00000010163 | 16 | 16 | 1.00 | 1.18 | 0.47 | 1.04 | 0.42 | |
Lagomorpha | Ochotona princeps | American pika | ENSOPRG00000002943 | 23 | 17 | 1.35 | 0.47 | 0.39 | 0.48 | 0.40 |
Laurasiatheria | ||||||||||
Cetartiodactyla | Bos taurus | Cow | BLAST: XM_002697263 | 21 | 16 | 1.31 | 1.03 | 0.44 | 1.45 | 0.62 |
Sus scrofa | Pig | ENSSSCG00000001710 | 22 | 17 | 1.29 | 2.05 | 0.64 | 2.41 | 0.75 | |
Tursiops truncatus | Bottlenose dolphin | ENSTTRG00000006943 | 23 | 13 | 1.77 | 1.81 | 0.63 | 1.88 | 0.65 | |
Perissodactyla | Equus caballus | Horse | ENSECAG00000020875 | 16 | 3 | 5.33 | 0.67 | 0.33 | 1.29 | 0.64 |
Carnivora | Canis familiaris (2) | Dog (Breed: huskey) | this study | 20 | 8 | 2.50 | 0.75 | 0.35 | 1.04 | 0.48 |
Felis catus | Cat | this study | 21 | 10 | 2.10 | 0.34 | 0.20 | 0.50 | 0.29 | |
Meles meles | Badger | this study | 19 | 7 | 2.71 | 0.59 | 0.26 | 0.87 | 0.38 | |
Chiroptera | Myotis lucifugus | Microbat/Little brown bat | BLAST: wgs read 992289586 | 20 | 14 | 1.43 | 0.70 | 0.34 | 0.99 | 0.48 |
Pteropus vampyrus | Megabat/Large flying fox | ENSPVAG00000001720 | 22 | 16 | 1.38 | 0.72 | 0.32 | 0.89 | 0.40 | |
Erinaceomorpha | Erinaceus europaeus | European hedgehog | ENSEEUG00000009243 | 14 | 13 | 1.08 | 0.69 | 0.30 | 0.85 | 0.37 |
Afrotheria | ||||||||||
Proboscidea | Loxodonta africana | African bush elephant | BLAST: wgs read 468964616 | 18 | 17 | 1.06 | 0.93 | 0.33 | 1.43 | 0.50 |
Tenrecomorpha | Hemicentetes semispinosus | Streaked tenrec | this study | 21 | 15 (14A V 1A) | 1.40 | 1.06 | 0.51 | 0.90 | 0.43 |
Microgale dobsoni | Dobson's shrew tenrec | this study | 22 | 14 (12A V 2A) | 1.57 | 0.72 | 0.37 | 0.81 | 0.42 | |
Tenrec ecaudatus | Tailless tenrec | this study | 22 | 15 (13A V 2A) | 1.47 | 1.01 | 0.41 | 1.35 | 0.55 | |
Xenarthra | ||||||||||
Pilosa | Bradypus tridactylus | Pale-throated three-toed sloth | this study | 16 | 13 | 1.23 | 0.39 | 0.24 | 0.41 | 0.25 |
Choloepus didactylus (3) | Linnaeus's two-toed sloth | this study | 14 | 17 | 0.82 | 0.54 | 0.30 | 0.59 | 0.33 | |
Choloepus hoffmanni | Hoffman's two-toed sloth | this study | 14 | 16 | 0.88 | 0.55 | 0.30 | 0.62 | 0.33 | |
Cyclopes didactylus | Silky anteater | this study | 18 | 15 | 1.20 | 0.62 | 0.34 | 0.62 | 0.34 | |
Myrmecophaga tridactyla (2) | Giant anteater | this study | 21 | 18 or 16 (14A V 2A) | 1.24 | 7.46 | 0.66 | 7.29 | 0.65 | |
Tamandua tetradactyla (3) | Southern tamandua | this study | 21-22 | 15-16 (13-14A V 2A) | 1.37 | 0.98 | 0.62 | 0.98 | 0.61 | |
Cingulata | Cabassous unicinctus | Southern naked-tailed armadillo | this study | 20 | 14 (12A V 2A) | 1.43 | 0.86 | 0.32 | 1.35 | 0.50 |
Chaetophractus villosus | Large hairy armadillo | this study | 19 | 16 | 1.19 | 1.47 | 0.56 | 1.45 | 0.55 | |
Chlamyphorus truncatus | Pink fairy armadillo | this study | 23 | 15 (13A V 2A) | 1.53 | 0.62 | 0.24 | 1.46 | 0.57 | |
Dasypus novemcinctus | Nine-banded armadillo | BLAST: wgs read 1959731662 | 22 | 16 (14A V 2A) | 1.38 | 2.55 | 0.71 | 2.33 | 0.65 | |
Priodontes maximus | Giant armadillo | this study | 21 | 15 (13A V 2A) | 1.40 | 1.96 | 0.63 | 1.78 | 0.57 | |
Zaedyus pichiy | Dwarf armadillo | this study | 21 | 16 (14A V 2A) | 1.31 | 0.72 | 0.29 | 1.34 | 0.54 |