Skip to main content

Table 1 List of species included in this study

From: Comparative genomics of proteins involved in RNA nucleocytoplasmic export

Species

Code

Lineage

Supergroup

Data Source

Homo sapiens

Hsa

Metazoa

Opisthokonta

NCBI RefSeq

Mus musculus a

Mmu

Metazoa

Opisthokonta

NCBI RefSeq

Rattus norvegicus a

Rno

Metazoa

Opisthokonta

NCBI RefSeq

Gallus gallus a

Gga

Metazoa

Opisthokonta

NCBI RefSeq

Xenopus tropicalis a

Xtr

Metazoa

Opisthokonta

NCBI RefSeq

Danio rerio a

Dre

Metazoa

Opisthokonta

NCBI RefSeq

Takifugu rubripes

Fru

Metazoa

Opisthokonta

Fugu Genome Project

Ciona intestinalis

Cin

Metazoa

Opisthokonta

NCBI RefSeq

Anopheles gambiae a

Aga

Metazoa

Opisthokonta

NCBI RefSeq

Drosophila melanogaster

Dme

Metazoa

Opisthokonta

NCBI RefSeq

Apis mellifera a

Ame

Metazoa

Opisthokonta

NCBI RefSeq

Caenorhabditis briggsae a

Cbr

Metazoa

Opisthokonta

NCBI RefSeq

Caenorhabditis elegans

Cel

Metazoa

Opisthokonta

NCBI RefSeq

Monosiga brevicollis

Mbr

Choanoflagellate

Opisthokonta

NCBI RefSeq

Saccharomyces cerevisiae a

Sce

Fungi

Opisthokonta

NCBI RefSeq

Candida glabrata

Cgl

Fungi

Opisthokonta

NCBI RefSeq

Ashbya gossypii a

Ago

Fungi

Opisthokonta

NCBI RefSeq

Kluyveromyces lactis

Kla

Fungi

Opisthokonta

NCBI RefSeq

Debaryomyces hansenii

Dha

Fungi

Opisthokonta

NCBI RefSeq

Yarrowia lipolytica

Yli

Fungi

Opisthokonta

NCBI RefSeq

Magnaporthe oryzae a

Mor

Fungi

Opisthokonta

NCBI RefSeq

Neurospora crassa a

Ncr

Fungi

Opisthokonta

NCBI RefSeq

Fusarium oxysporum a

Fox

Fungi

Opisthokonta

NCBI RefSeq

Aspergillus fumigatus

Afu

Fungi

Opisthokonta

NCBI RefSeq

Schizosaccharomyces pombe

Spo

Fungi

Opisthokonta

NCBI RefSeq

Cryptococcus neoformans

Cne

Fungi

Opisthokonta

NCBI RefSeq

Ustilago maydis a

Uma

Fungi

Opisthokonta

NCBI RefSeq

Encephalitozoon cuniculi

Ecu

Fungi

Opisthokonta

NCBI RefSeq

Dictyostelium discoideum

Ddi

Mycetozoa

Amoebozoa

NCBI RefSeq

Entamoeba dispar a

Edi

Archamoebae

Amoebozoa

NCBI RefSeq

Entamoeba histolytica

Ehi

Archamoebae

Amoebozoa

NCBI RefSeq

Arabidopsis thaliana

Ath

Streptophyta

Plantae

NCBI RefSeq

Oryza sativa

Osa

Streptophyta

Plantae

NCBI RefSeq

Populus trichocarpa

Pop

Streptophyta

Plantae

NCBI RefSeq

Physcomitrella patens

Ppa

Streptophyta

Plantae

NCBI RefSeq

Chlamydomonas reinhardtii

Cre

Chlorophyta

Plantae

NCBI RefSeq

Volvox carteri

Vca

Chlorophyta

Plantae

NCBI RefSeq

Ostreococcus lucimarinus a

Olu

Chlorophyta

Plantae

NCBI RefSeq

Cyanidioschyzon merolae

Cme

Rhodophyta

Plantae

U. of Tokyo

Guillardia theta b

Gth

Cryptophyta

Chromalveolata

NCBI RefSeq

Bigelowiella natans b

Bna

Cercozoa

Rhizaria

NCBI RefSeq

Emiliania huxleyi c

Ehu

Haptophyta

?

Joint Genome Institute

Theileria parva

Tpa

Alveolata

Chromalveolata

NCBI RefSeq

Plasmodium berghei a

Pbe

Alveolata

Chromalveolata

NCBI RefSeq

Plasmodium falciparum

Pfa

Alveolata

Chromalveolata

NCBI RefSeq

Plasmodium knowlesi a

Pkn

Alveolata

Chromalveolata

NCBI RefSeq

Plasmodium vivax a

Pvi

Alveolata

Chromalveolata

NCBI RefSeq

Plasmodium yoelii a

Pyo

Alveolata

Chromalveolata

NCBI RefSeq

Toxoplasma gondii

Tgo

Alveolata

Chromalveolata

ToxoDB

Cryptosporidium hominis a

Cho

Alveolata

Chromalveolata

NCBI RefSeq

Cryptosporidium parvum

Cpa

Alveolata

Chromalveolata

NCBI RefSeq

Paramecium tetraurelia

Pte

Alveolata

Chromalveolata

NCBI RefSeq

Tetrahymena thermophila

Tth

Alveolata

Chromalveolata

NCBI RefSeq

Phaeodactylum tricornutum

Ptr

Stramenopila

Chromalveolata

NCBI RefSeq

Thalassiosira pseudonana

Tps

Stramenopila

Chromalveolata

NCBI RefSeq

Phytophthora infestans

Pin

Stramenopila

Chromalveolata

NCBI RefSeq

Leishmania braziliensis a

Lbr

Kinetoplastida

Excavata

NCBI RefSeq

Leishmania infantum a

Lin

Kinetoplastida

Excavata

NCBI RefSeq

Leishmania major

Lma

Kinetoplastida

Excavata

NCBI RefSeq

Trypanosoma brucei

Tbr

Kinetoplastida

Excavata

NCBI RefSeq

Trypanosoma cruzi a

Tcr

Kinetoplastida

Excavata

NCBI RefSeq

Trypanosoma vivax a

Tvi

Kinetoplastida

Excavata

GeneDB

Naegleria gruberi

Ngr

Heterolobosea

Excavata

NCBI RefSeq

Giardia lamblia

Gla

Diplomonadida

Excavata

NCBI RefSeq

Trichomonas vaginalis

Tva

Parabasalia

Excavata

NCBI RefSeq

  1. a Results for these species are available in the Supplementary Online Material.
  2. b The nucleomorph genomes of these species were included in the searches. Despite the phylogenetic position of the hosts, they were members of placed close to Plantae in the tables because of the algal origin of the nucleomorphs.
  3. c The phylogenetic position of Emiliana is still unclear (see [11, 12]).