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Table 1 List of species included in this study

From: Comparative genomics of proteins involved in RNA nucleocytoplasmic export

Species Code Lineage Supergroup Data Source
Homo sapiens Hsa Metazoa Opisthokonta NCBI RefSeq
Mus musculus a Mmu Metazoa Opisthokonta NCBI RefSeq
Rattus norvegicus a Rno Metazoa Opisthokonta NCBI RefSeq
Gallus gallus a Gga Metazoa Opisthokonta NCBI RefSeq
Xenopus tropicalis a Xtr Metazoa Opisthokonta NCBI RefSeq
Danio rerio a Dre Metazoa Opisthokonta NCBI RefSeq
Takifugu rubripes Fru Metazoa Opisthokonta Fugu Genome Project
Ciona intestinalis Cin Metazoa Opisthokonta NCBI RefSeq
Anopheles gambiae a Aga Metazoa Opisthokonta NCBI RefSeq
Drosophila melanogaster Dme Metazoa Opisthokonta NCBI RefSeq
Apis mellifera a Ame Metazoa Opisthokonta NCBI RefSeq
Caenorhabditis briggsae a Cbr Metazoa Opisthokonta NCBI RefSeq
Caenorhabditis elegans Cel Metazoa Opisthokonta NCBI RefSeq
Monosiga brevicollis Mbr Choanoflagellate Opisthokonta NCBI RefSeq
Saccharomyces cerevisiae a Sce Fungi Opisthokonta NCBI RefSeq
Candida glabrata Cgl Fungi Opisthokonta NCBI RefSeq
Ashbya gossypii a Ago Fungi Opisthokonta NCBI RefSeq
Kluyveromyces lactis Kla Fungi Opisthokonta NCBI RefSeq
Debaryomyces hansenii Dha Fungi Opisthokonta NCBI RefSeq
Yarrowia lipolytica Yli Fungi Opisthokonta NCBI RefSeq
Magnaporthe oryzae a Mor Fungi Opisthokonta NCBI RefSeq
Neurospora crassa a Ncr Fungi Opisthokonta NCBI RefSeq
Fusarium oxysporum a Fox Fungi Opisthokonta NCBI RefSeq
Aspergillus fumigatus Afu Fungi Opisthokonta NCBI RefSeq
Schizosaccharomyces pombe Spo Fungi Opisthokonta NCBI RefSeq
Cryptococcus neoformans Cne Fungi Opisthokonta NCBI RefSeq
Ustilago maydis a Uma Fungi Opisthokonta NCBI RefSeq
Encephalitozoon cuniculi Ecu Fungi Opisthokonta NCBI RefSeq
Dictyostelium discoideum Ddi Mycetozoa Amoebozoa NCBI RefSeq
Entamoeba dispar a Edi Archamoebae Amoebozoa NCBI RefSeq
Entamoeba histolytica Ehi Archamoebae Amoebozoa NCBI RefSeq
Arabidopsis thaliana Ath Streptophyta Plantae NCBI RefSeq
Oryza sativa Osa Streptophyta Plantae NCBI RefSeq
Populus trichocarpa Pop Streptophyta Plantae NCBI RefSeq
Physcomitrella patens Ppa Streptophyta Plantae NCBI RefSeq
Chlamydomonas reinhardtii Cre Chlorophyta Plantae NCBI RefSeq
Volvox carteri Vca Chlorophyta Plantae NCBI RefSeq
Ostreococcus lucimarinus a Olu Chlorophyta Plantae NCBI RefSeq
Cyanidioschyzon merolae Cme Rhodophyta Plantae U. of Tokyo
Guillardia theta b Gth Cryptophyta Chromalveolata NCBI RefSeq
Bigelowiella natans b Bna Cercozoa Rhizaria NCBI RefSeq
Emiliania huxleyi c Ehu Haptophyta ? Joint Genome Institute
Theileria parva Tpa Alveolata Chromalveolata NCBI RefSeq
Plasmodium berghei a Pbe Alveolata Chromalveolata NCBI RefSeq
Plasmodium falciparum Pfa Alveolata Chromalveolata NCBI RefSeq
Plasmodium knowlesi a Pkn Alveolata Chromalveolata NCBI RefSeq
Plasmodium vivax a Pvi Alveolata Chromalveolata NCBI RefSeq
Plasmodium yoelii a Pyo Alveolata Chromalveolata NCBI RefSeq
Toxoplasma gondii Tgo Alveolata Chromalveolata ToxoDB
Cryptosporidium hominis a Cho Alveolata Chromalveolata NCBI RefSeq
Cryptosporidium parvum Cpa Alveolata Chromalveolata NCBI RefSeq
Paramecium tetraurelia Pte Alveolata Chromalveolata NCBI RefSeq
Tetrahymena thermophila Tth Alveolata Chromalveolata NCBI RefSeq
Phaeodactylum tricornutum Ptr Stramenopila Chromalveolata NCBI RefSeq
Thalassiosira pseudonana Tps Stramenopila Chromalveolata NCBI RefSeq
Phytophthora infestans Pin Stramenopila Chromalveolata NCBI RefSeq
Leishmania braziliensis a Lbr Kinetoplastida Excavata NCBI RefSeq
Leishmania infantum a Lin Kinetoplastida Excavata NCBI RefSeq
Leishmania major Lma Kinetoplastida Excavata NCBI RefSeq
Trypanosoma brucei Tbr Kinetoplastida Excavata NCBI RefSeq
Trypanosoma cruzi a Tcr Kinetoplastida Excavata NCBI RefSeq
Trypanosoma vivax a Tvi Kinetoplastida Excavata GeneDB
Naegleria gruberi Ngr Heterolobosea Excavata NCBI RefSeq
Giardia lamblia Gla Diplomonadida Excavata NCBI RefSeq
Trichomonas vaginalis Tva Parabasalia Excavata NCBI RefSeq
  1. a Results for these species are available in the Supplementary Online Material.
  2. b The nucleomorph genomes of these species were included in the searches. Despite the phylogenetic position of the hosts, they were members of placed close to Plantae in the tables because of the algal origin of the nucleomorphs.
  3. c The phylogenetic position of Emiliana is still unclear (see [11, 12]).