FLU, an amino acid substitution model for influenza proteins

Table 5 Comparisons of FLU and 14 other models in constructing maximum likelihood trees (-F option).

	1^st	2^nd	3^rd	4^th	5^th	6^th	7^th	8^th	9^th	10^th	11^th	12^th	13^th	14^th	15^th
FLU	680	129	147	19	2	4	4	4	1	1	1	0	0	0	0
HIVb	200	405	198	46	33	64	18	8	7	6	7	0	0	0	0
HIVw	91	115	200	178	64	58	144	20	29	16	16	61	0	0	0
JTT	14	274	290	398	14	0	1	0	1	0	0	0	0	0	0
LG	5	15	26	75	168	394	189	15	64	21	16	4	0	0	0
CpREV	2	25	54	204	542	112	13	20	8	7	4	1	0	0	0
WAG	1	28	70	55	134	278	357	43	25	1	0	0	0	0	0
Dayhoff	0	1	0	1	8	18	94	196	209	235	200	24	5	1	0
VT	0	0	3	9	17	30	74	226	192	164	178	71	24	4	0
Blosum62	0	0	3	7	8	18	28	103	84	139	95	436	24	47	0
DCMut	0	0	1	0	1	9	35	103	176	207	249	199	8	4	0
RtREV	0	0	0	0	1	5	29	234	175	174	190	157	14	13	0
MtMam	0	0	0	0	0	2	5	12	10	15	16	14	49	638	230
MtREV	0	0	0	0	0	0	1	8	11	6	20	25	849	69	3
MtArt	0	0	0	0	0	0	0	0	0	0	0	0	19	216	757

The number on the cell of model M and column p indicates the number of alignments where M model stands at the rank p over 15 models tested. For example, FLU model stands at the first rank for 680 out of 992 alignments.

ISSN: 2730-7182