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Table 2 Primers for real-time qPCR, amplification efficiency (%) and amplicon size (bp).

From: Genomic organization and gene expression of the multiple globins in Atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters

Gene

Name

Sequence (5' to 3')

Efficiency

Size

α1

A1F

GACTTACTTCAGCCACTGGAAGAGCCT C

96

153

 

A1R

TTGAAGGCGTGCAGCTCGCTCAGAG

  

α2

A2F

GTCCTATTTCTCTCACTGGAAGGACGCG

85

153

 

A2R

ATGAACGCGTGCAGCTCGCTAAGGC

  

α3

A3F

CACATCATACCCTGGCACCAAGAC

95

172

 

A3R

CTGGTAGGCGTGGTAGGTTTGAAGAG

  

α4

A4F

TTCTCCCACTGGAAAGACCTCGG

70

138

 

A4R

ATGGAGCTCACTGAGCTCGAGAAG

  

β1 allele A

B1FA

TTATGGGAAACCCCAAGGTGGCCAA

91

131

 

B1R

GTGCAGTTTCTCGGAGTGCAGCACGC

  

β1 allele B

B1FB

TTGTGGGAAACCCCAAGGTGGCTGC

98

131

 

B1R

GTGCAGTTTCTCGGAGTGCAGCACGC

  

β2

B2F

CCTGTACAATGCAGAGACCATCATGGC

84

151

 

B2R

GTGCAGCTTGTCAGAGTGGAGCAGAG

  

β3

B3F

ACAGATAGTGAGCGCGCCATCATTAA

86

176

 

B34R

GCGGCGATCAGGGGGTTGCACAG

  

β4

B4F

ACAGATAGTGAGCGCGCCATCATTAC

95

176

 

B34R

GCGGCGATCAGGGGGTTGCACAG

  

β5

B5F

GTGGACTCGGAGGTACTTTGGAAAC

89

168

 

B5R

TGCAGCTGACTGAGCTCGCAATAG

  

Ubiquitin

UbiF

GGCCGCAAAGATGCAGAT

81

69

 

UbiR

CTGGGCTCGACCTCAAGAGT

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