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Table 1 SNP mining and haplotype classification of WMAI from wild emmer wheat.

From: The impact of single nucleotide polymorphism in monomeric alpha-amylase inhibitor genes from wild emmer wheat, primarily from Israel and Golan

Haplotype

Numbers

SNP Position

051

072

084

096

120

139

141

180

183

228

232

246

282

288

297

315

336

338

339

350

382

396

415

433

438

445

451

452

Population

5

8

9

11

16

17

18

19

23

24

25

28

29

30

H01

G

T

C

T

G

G

A

G

C

G

G

A

T

T

G

G

C

G

G

T

T

T

A

T

C

C

G

T

4

  

1

     

1

 

1

 

1

 

H02

G

T

C

T

G

G

A

G

C

G

G

A

T

T

G

G

C

G

G

T

T

T

A

T

C

C

G

C

18

1

1

 

2

1

5

 

1

2

 

2

2

 

1

H03

G

T

C

T

G

G

A

G

C

G

G

A

T

T

G

G

C

G

G

T

T

T

A

T

C

A

G

C

1

          

1

   

H04

G

T

C

T

G

G

A

G

C

G

G

A

T

T

G

G

C

G

G

T

T

T

A

T

C

C

A

C

13

 

1

1

2

 

1

  

1

 

3

4

  

H05

G

T

C

T

G

G

A

G

C

G

G

A

T

T

G

G

C

G

G

T

T

T

A

T

G

C

A

C

1

           

1

  

H06

G

T

C

T

G

G

A

G

C

G

G

A

T

T

G

G

C

G

G

T

T

T

A

C

C

C

G

C

1

     

1

        

H07

G

T

A

T

G

G

A

G

C

G

G

A

T

T

G

G

C

G

G

T

T

C

A

T

C

C

A

C

1

  

1

           

H08

G

T

C

T

G

G

A

G

C

G

G

A

T

T

G

G

C

G

G

T

T

T

A

C

C

A

G

C

1

      

1

       

H09

G

T

C

T

G

G

A

G

C

G

G

A

T

T

G

G

C

G

G

T

C

T

A

C

C

C

A

C

1

             

1

H10

G

C

T

T

C

G

G

G

C

C

G

G

C

G

A

A

T

G

A

T

T

T

G

T

G

C

A

C

46

14

8

7

6

 

2

3

  

1

1

1

 

3

H11

G

C

T

T

C

G

G

G

C

C

G

G

C

G

A

A

T

G

A

C

T

T

G

T

G

C

A

C

1

       

1

      

H12

G

C

T

T

C

G

G

G

C

C

G

G

C

G

A

A

T

G

A

T

T

T

G

T

G

A

A

C

1

       

1

      

H13

G

C

T

T

C

G

G

T

C

C

G

G

C

G

A

A

T

G

A

T

T

T

G

T

G

C

A

C

1

  

1

           

H14

G

C

T

T

C

G

G

T

C

C

G

G

C

G

A

A

T

G

A

C

T

T

G

T

G

C

A

C

2

  

2

           

H15

G

C

T

T

C

G

G

G

C

C

G

G

C

G

A

A

T

G

A

T

T

T

G

T

G

C

G

C

15

4

4

4

 

1

    

2

    

H16

G

C

T

T

C

G

G

G

C

C

G

G

C

G

A

A

T

G

A

T

T

T

G

T

G

C

G

T

158

12

5

7

2

7

 

23

22

21

21

5

8

7

18

H17

G

C

T

T

C

G

G

G

C

C

G

G

C

G

G

A

T

G

A

T

T

T

G

T

G

C

G

T

1

       

1

      

H18

G

C

T

T

C

G

G

G

C

C

G

G

C

G

A

A

T

G

A

T

T

.

G

T

G

C

G

T

4

 

1

1

    

2

      

H19

G

C

T

T

C

G

G

G

C

C

G

G

C

G

A

A

T

G

A

T

T

T

G

C

G

C

G

T

1

1

             

H20

G

C

T

T

C

G

G

G

C

C

G

G

C

G

A

A

T

G

A

T

T

T

G

T

G

A

G

C

1

  

1

           

H21

G

C

T

T

C

G

G

T

C

C

G

G

C

G

A

A

T

G

A

T

C

T

G

T

G

C

A

C

4

    

2

      

1

 

1

H22

G

C

T

T

C

G

G

T

C

C

G

G

C

G

A

A

T

G

A

T

C

T

G

T

G

A

A

C

1

           

1

  

H23

G

C

T

T

C

G

G

T

C

C

G

G

C

G

A

A

T

G

A

T

C

T

G

T

G

C

.

C

1

             

1

H24

G

C

C

T

C

G

G

G

C

C

G

G

C

G

A

A

T

G

A

T

T

T

G

T

G

C

A

C

1

   

1

          

H25

G

C

T

T

C

G

G

G

C

C

G

G

C

G

A

A

C

G

A

T

T

T

A

T

C

C

A

C

1

    

1

         

H26

G

C

C

T

C

A

G

G

A

C

A

G

C

G

A

A

C

T

A

T

T

T

A

T

G

C

A

C

10

2

3

2

1

  

2

       

H27

G

C

C

T

C

A

G

G

A

C

A

G

C

G

A

A

C

T

A

T

T

T

A

T

G

C

G

C

2

 

1

   

1

        

H28

G

C

C

T

C

A

G

G

A

C

A

G

C

G

A

A

C

T

A

T

T

T

A

T

G

C

A

T

1

      

1

       

H29

G

C

C

T

C

A

G

G

A

C

A

G

C

G

A

G

C

T

A

T

T

T

A

T

G

C

A

C

1

 

1

            

H30

A

C

C

T

C

A

G

G

A

C

A

G

C

G

A

A

C

T

A

T

T

T

A

T

G

C

G

T

46

    

10

1

  

1

7

14

12

1

 

H31

A

C

C

T

C

A

G

G

A

C

A

G

C

G

A

A

C

T

A

T

T

C

A

T

G

C

G

T

1

          

1

   

H32

A

C

C

T

C

A

G

G

A

C

A

G

C

G

A

A

C

T

A

C

T

T

A

T

G

C

G

T

1

           

1

  

H33

A

C

C

G

C

A

G

G

C

C

G

G

C

G

A

A

C

T

A

T

T

T

A

T

G

C

G

T

6

            

6

 
  1. SNPs responsible for amino acid substitution are in bold.
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BMC Ecology and Evolution

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