WAMI: a web server for the analysis of minisatellite maps

Table 1 WAMI running times

Task	Dataset	Num.	Iteration	Time
Alignment	MS205	91806	1	2.5
	MSY1	59340	1	3.25
	Random100	5000	1	0.3
	Random200	20000	1	1.3
	Random400	80000	1	5
Structural variation	MS205	91806	2	4
	MSY1	59340	2	6
	Random100	5000	2	0.6
	Random200	20000	2	2.3
	Random400	80000	2	9
	MSY1	59340	10	0.3
	MSY1	59340	25	1
	MSY1	59340	50	1.8
	MS205	91806	10	2.3
	MS205	91806	25	5.5
	MS205	91806	50	11
Directional bias	Random100	5000	10	0.2
	Random100	5000	25	0.5
	Random100	5000	50	1
	Random200	20000	10	1
	Random200	20000	25	2.1
	Random200	20000	50	4.1
	Random400	80000	10	3.5
	Random400	80000	25	8
	Random400	80000	50	16

Running times in minutes on WAMI for the MSY1 and MS205 (haplotype C) datasets. The column titled "Dataset" contains the dataset used. "Random100", "Random200", and "Random400" are datasets with 100, 200, and 400 artificial maps, respectively. The column titled "Num." contains the number of pairwise map alignments which need to be computed. The column titled "iteration" includes the number of randomization steps (and hence increased data size) in the analysis of duplication dynamics. The number of iterations in the task of analyzing structural variation is 2 because it runs one time on the original dataset and one time on randomized dataset of the same size.

ISSN: 2730-7182