Skip to main content

Table 3 Accuracy of PHASE haplotype pair reconstructions.

From: Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation

 

Error

0.90 threshold

0.60 threshold

Dataset

category

90-N ERR

90-N LCP incorrect

60-N ERR

60-N LCP incorrect

Simulated

E COR + NOV

-

1

-

1

 

E COR + MIS

2

-

2

-

 

E MIS + MIS

-

2

-

2

 

E MIS + NOV

3

41

7

37

 

Total

5

44

9

40

Empirical

E COR + NOV

-

-

-

-

 

E COR + MIS

-

-

-

-

 

E MIS + MIS

-

-

-

-

 

E MIS + NOV

3

3

3

3

 

Total

3

3

3

3

  1. False positives (NERR) and incorrect reconstructions that had appropriately low confidence probabilities (NLCP incorrect) are reported for simulated and empirical datasets under two alternative PHASE confidence probability thresholds. Error categories reflect the nature of inference mistakes, and are described in Methods.
Back to article page

BMC Ecology and Evolution

ISSN: 2730-7182

Contact us