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Table 1 Species analyzed and their geographic sources

From: Multiple source genes of HAmo SINE actively expanded and ongoing retroposition in cyprinid genomes relying on its partner LINE

Subfamily

Taxa

Sampling location

Ra2 gene

Hypophthalmichthyinae

Hypophthalmichthys molitrix

Wuhan, Hubei Prov.

DQ367002

 

Aristichthys nobilis

Wuhan, Hubei Prov.

DQ367038

Xenocyprinae

Distoechodon hupeinensis

Jingkou, Hubei Prov.

DQ366998 (a)

 

Xenocypris argentea

Taoyuan, Hunan Prov.

DQ367024

Cultrinae

Culter alburnus

Taoyuan, Hunan Prov.

DQ367004

Leuciscinae

Leuciscus tumensis

Tumen, Jilin Prov.

This paper

 

Ctenopharyngodon idella

Jingkou, Hubei Prov.

DQ366996

 

Squaliobarbus curriculus

Taoyuan, Hunan Prov.

DQ367021

 

Elopichthys bambusa

Taoyuan, Hunan Prov.

DQ367016

 

Mylopharyngodon piceus

Jingzhou, Hunan Prov.

DQ367011

Acheilognathinae

Rhodeus ocellatus

Wuhan, Hubei Prov.

This paper

Gobioninae

Saurogobio dabryi

Wangzhou, Chongqing.

DQ367020

Cyprininae

Cyprinus carpio

Wuhan, Hubei Prov.

DQ366994

Labeoninae

Garra orientalis

Ledong, Hainan Prov.

DQ366957

Schizothoracinae

Shizothorax grahami

Kuming, Yunnan Prov

DQ366989 (b)

Barbinae

Barbodes opisthoptera

Mengla, Yunnan Prov.

DQ366952 (c)

Danioninae

Opsariichthys bidens

Taoyuan, Hunan Prov.

DQ367014

 

Danio apogon

Mengla, Yunnan Prov

DQ367039

 

Danio rerio

GenBank

NC_007136

Outgroup

Myxocyprinus asiaticus

Wuhan, Hubei Prov

DQ367043

 

Micronemacheilus pulcher

Rong'an, Gaungxi Prov.

DQ367041

  1. The rag2 sequences of the noted (a b c) three species was substituted by another species in the same genus, because of the absence of their rag2 sequence in ncbi. A: Distoechodon tumirostris B: Schizothorax meridionalis C: Barbodes huangchuchieni