Variable | Description |
---|---|
NicheBreadth | Predicted niche breadth from global environmental sequencing datasets (see Methods) |
diversity(panEFMs) | The diversity between reaction frequency of panEFMs sampled in different virtual environments (Average squared pairwise Euclidean distance) |
fluidity(panEFMs) | The average dissimilarity between panEFMs independently of the random environments in which it was sampled |
pan(panEFMs) | Total reactions that are included in at least one of the panEFMs sampled in different virtual environments |
pan(Reactomes) | The number of reactions found in the pan-reactome of a prokaryote family |
size(panEFMs) | The average size of panEFMs sampled in different virtual environments |
size(Reactomes) | The average size of the natural reactomes from a prokaryote family |
core(panEFMs) | The number of reactions that are present in at least 98% of the panEFMs sampled in different virtual environments |
core(Reactomes) | The number of reactions present in at least 98% of the natural reactomes from a prokaryote family |
shell(panEFMs) | The number of reactions that are present in 3 to 98% of all the panEFMs sampled in different virtual environments |
shell(Reactomes) | The number of reactions that are present in 3 to 98% of the natural reactomes from a prokaryote family |
cloud(panEFMs) | The number of reactions present in up to 3% of the panEFMs sampled in different virtual environments |
cloud(Reactomes) | The number of reactions present in up to 3% of the natural reactomes from a prokaryote family |
diversity(Metabs) | The diversity between metabolite usage profiles of panEFMs sampled in different virtual environments (Average squared pairwise Euclidean distance) |
EnvDReacs | The number of reactions with an environment-driven score (EDS) EDS significantly > 0 (adj. p < 0.05 on a Z-test) |
EnvDMetabs | The number of metabolites that are significantly associated with reactions with a non-zero EDS |