Fig. 3
Genomic history of GNP and other baboons. A Patterns of shared alleles (D-statistics results). Upper panel: P. ursinus and GNP comparisons; lower panel: P. anubis and P. anubis 30877 comparisons. H1 and H2 refer to the two populations being compared to the test population, H3. Bars show the extension of three standard deviations; thicker parts refer to a single standard deviation. Colors as in Fig. 2. B Reconstruction of the genetic relationships between different Papio species with the addition of admixture events using qpGraph. GNP and all Papio species, except for P. kindae and P. hamadryas, are included. The f4 statistics (Z = 1.356) with poorest correlation, reported at the top, do not reject the topology in the figure. The label “Mozambique” refers to sample GNP. C Changes in effective population sizes. The results of the PSMC analysis for GNP and one individual for each Papio species, including all sites. Full results in Additional file 1: Fig. S5