Skip to main content

Table 1 Characteristics of the loci included in each gene shopping scheme, and the resulting alignments

From: Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements

 

95%

100%

95%-loci-clocklike

95%-loci-treelike

95%-PF-clocklike

95%-PF-treelike

95%-PF-largest

Number of loci

1415

69

69

69

26

54

55

Aligned length among loci

565 (189–1332)

613 (430–1066)

601 (405–1113)

625 (426–1070)

576 (406–765)

555 (337–775)

566 (352–863)

GC content among loci

0.42 (0.30–0.68)

0.47 (0.35–0.64)

0.40 (0.30–0.47)

0.47 (0.34–0.64)

0.37 (0.30–0.41)

0.41 (0.34–0.48)

0.39 (0.35–0.49)

Alpha parameter among loci

0.20 (0.02–29.58)

0.20 (0.02–0.78)

0.02 (0.02–29.58)

0.39 (0.11–1.19)

0.02 (0.02–29.58)

0.34 (0.19–0.79)

0.04 (0.02–12.81)

Length of the alignment

799,310

42,269

41,443

43,109

14,985

30,133

31,041

Average percent of missing data (gaps, ?'s, N's) across alignment

15.70%

14.40%

14.60%

17.20%

15.30%

14.80%

13.70%

Average percent of informative sites across alignment (gaps ignored)

11.40%

14%

2.10%

20.90%

1%

11.90%

2.20%