Table 3 Positive selected sites tested using different methods
Gene | Codon | Method | Parameter | Significant |
|---|---|---|---|---|
ND2 | 331 | Codeml (site model) | ω2 = 52.46859 (M2a) ω = 2.37570 (M8) | PP = 0.671 (M2a) PP = 0.809 (M8) |
|  | 331 | FEL | ω > 1, LRT = 3.52 | P = 0.06 |
|  | 331 | MEME | ω > 1, LRT = 4.22 | P = 0.045* |
ND5 | 543 | Codeml (branch-site model) | ω2b = 40.98885 | PP = 0.992** |
|  | 543 | MEME | ω > 1, LRT = 14.45 | P = 0.0003*** |
ND6 | 101 | Codeml (site model) | ω2 = 6.32703 (M2a) ω = 6.63018 (M8) | PP = 0.925* (M2a) PP = 0.986* (M8) |
|  | 101 | REL | Bayes factor = 981.166 | PP = 0.98* |