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Table 1 Primers used in methyl-specific PCR

From: Organization and expression analysis of 5S and 45S ribosomal DNA clusters in autotetraploid Carassius auratus

Primer name

Sequence

For clonig sequence

 NTS-F

5′-GCTATGCCCGATCTCGTCTGA-3′

 NTS-R

5′-CAGGTTGGTATGGCCGTAAGC-3′

 IGS-F

5′-GGGTGGCGGCGTCTGATAGA-3′

 IGS-R

5′-CCCAAACTTCAGGATTTGTGC-3′

For methyl-specific PCR

 NTS I-F

5′-CGGAAGTTAAGTAGGTTTGGGT-3′

 NTS I-R

5′-GTAAACGAAAACTACTACAAAA-3′

 NTS II-F

5′- GAATATTAGGTGTTGTAAGTT-3′

 NTS II-R

5′-AACCGTAAACGAAATCTACTA-3′

 NTS III-F

5′-TTGGGAATATTAGGTGTTGTAA-3′

 NTS III-R

5′-TAAACGAAAACAACTACAAAAA-3′

 IGS RCC-F

5′-GYGTTTGATAGAGGGTTAYGGGGTTT-3′

 IGS RCC-R

5′-TAAAAACCCRTCAACCCCTCTCAAAC-3′

 IGS 4nRR I-F

5′-GTTGTATTTYGGTTTTTTTGGGGGTT-3′

 IGS 4nRR I-R

5′-TAATAAAAACCCGTCAACCCCTCTCA-3′

 IGS 4nRR II-F

5′-TTTTGGTTTTYGGTGGTGTGGGGATT-3′

 IGS 4nRR II-R

5′-TCTCAACRACRCCRAAACCCAAAAAC-3′