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Table 3 Data characteristics and models selected in Maximal Likelihood and Bayes Inference analyses for phylogenetic data sets

From: Plastome structure and phylogenetic relationships of Styracaceae (Ericales)

Datasets

No. of taxa

No. of site

No. of variable (%)

Parsimony informative sites (%)

Best Fit Model

Model in ML

Model in BI

Whole plastomes

31

180369

31865 (17.66)

21804 (12.08)

GTR + I + G

GTR + I + G

TVM + I + G

Coding

31

79755

13242 (16.60)

9395 (11.78)

GTR + I + G

GTR + I + G

GTR + I + G

Noncoding

31

131319

21014 (16.00)

11940 (9.09)

TVM + I + G

GTR + I + G

TVM + I + G

IRb

31

28419

1900 (6.68)

938 (3.30)

TVM + I + G

GTR + I + G

TVM + I + G

LSC

31

104030

23519 (22.60)

17151 (16.49)

GTR + I + G

GTR + I + G

GTR + G

SSC

31

22329

5021 (22.49)

3024 (13.54)

TVM + I + G

GTR + I + G

GTR + I + G

LSC + SSC

31

126237

28623 (22.67)

20158 (15.96)

GTR + I + G

GTR + I + G

GTR + I + G

  1. IR, Inverted repeat; LSC, Large single copy; SSC, Small single copy