Searching for signatures of positive selection in cytochrome b gene associated with subterranean lifestyle in fast-evolving arvicolines (Arvicolinae, Cricetidae, Rodentia)

Table 2 Sites in cytB gene under positive selection

	PAML	MEME	FEL	Manual	AA patterns
All species	No sites	234, 249	241	4, 236, 237, 241	4, 234, 237, 241, 249
Ellobius sp.	No sites	No sites	241	N/A	241
L. mandarinus	42, 238, 241	238	244, 329	N/A	42, 238, 241, 329
M. pinetorum	No sites	313	60, 299	N/A	60, 299
P. schaposchnikowi	No sites	No sites	160, 266, 296, 329	N/A	160, 266, 296, 329
T. subterraneus	43, 303	No sites	No sites	N/A	43, 303

Analyses were performed simultaneously on all species and separate clades shown on Fig. 3. N/A not analyzed, no sites analysis did not show sites with a significant difference, Manual manual searching of sites with higher substitution density, AA patterns amino acid substitution patterns at intraspecific level

ISSN: 2730-7182