Museomics and phylogenomics with protein-encoding ultraconserved elements illuminate the evolution of life history and phallic morphology of flesh flies (Diptera: Sarcophagidae)

Table 1 Summary of datasets and phylogenomic analyses

Analysis number	Datamatrix	Occupancy (%)	UCE loci	Sequence coding	Model	Analysis	Topology
1	10_nt_ml	0.10	2018	Nucleotides	GTRCAT	concat. RAxML	A
2	20_nt_ml	0.20	1778	Nucleotides	GTRCAT	concat. RAxML	A
3	30_nt_ml	0.30	1634	Nucleotides	GTRCAT	concat. RAxML	A
4	40_nt_ml	0.40	1524	Nucleotides	GTRCAT	concat. RAxML	A
5	50_nt_ml	0.50	1417	Nucleotides	GTRCAT	concat. RAxML	A
6	60_nt_ml	0.60	1271	Nucleotides	GTRCAT	concat. RAxML	A
7	70_nt_ml	0.70	936	Nucleotides	GTRCAT	concat. RAxML	int.
8	80_nt_ml	0.80	440	Nucleotides	GTRCAT	concat. RAxML	int.
9	90_nt_ml	0.90	59	Nucleotides	GTRCAT	concat. RAxML	B
10	10_nt_astral	0.10	2018	Nucleotides	GTR + F + I + G4	coales. ASTRAL-III	A
11	30_nt_astral	0.30	1634	Nucleotides	GTR + F + I + G4	coales. ASTRAL-III	A
12	60_nt_astral	0.60	1271	Nucleotides	GTR + F + I + G4	coales. ASTRAL-III	A
13	75_nt_astral	0.75	288	Nucleotides	GTR + F + I + G4	coales. ASTRAL-III	int.
14	10_aa_astral	0.10	2018	Amino acids	HIVw + F + I + G4	coales. ASTRAL-III	A
15	30_aa_astral	0.30	1634	Amino acids	HIVw + F + I + G4	coales. ASTRAL-III	A
16	60_aa_astral	0.60	1271	Amino acids	HIVw + F + I + G4	coales. ASTRAL-III	A
17	75_aa_astral	0.75	288	Amino acids	HIVw + F + I + G4	coales. ASTRAL-III	int.

Topologies have been grouped into A, B and ‘int’ for intermediate according to their phylogenetic relationships

ISSN: 2730-7182