Skip to main content

Table 1 Sample location and genetic diversity estimation of Opisthopappus populations

From: Localized environmental heterogeneity drives the population differentiation of two endangered and endemic Opisthopappus Shih species

Species

Population

Individual number (InDel/SNP)

Location

Longitude (E)

Latitude (N)

Altitude (m)

Number hapelotypes

Haplotype diversity (Hd)

Nucleotide diversity (π)

Na

Ne

H

I

PPL

O. l

HLT

14*/5#

Heilongtan, Shanxi

113.49°

36.01°

1054

H1(1)H2(2)H3(1)H4(1)

0.9

0.00083

1.2

1.1031

0.0631

0.0971

20.00%

 

HDX

22*/5#

Hongdouxia,Shanxi

113.52°

35.91°

1070

H5(1)H6(1)H7(1)H8(1)H9(1)

1

0.00198

1.2923

1.145

0.0912

0.1413

29.23%

 

BWD

9*/5#

Beiwudang,Hebei

114.08°

37.06°

1160

H10(1)H11(1)H12(1)H13(1)H14(1)

1

0.00208

1.2

1.146

0.0803

0.1167

20.00%

 

HGS

7*/5#

Honggushan,Henan

113.72°

36.00°

741

H8(1)H15(1)H16(1)H17(1)H18(1)

1

0.00135

1.2308

1.1051

0.0671

0.1056

23.08%

 

BXT

18*/5#

Beixiangtang,Hebei

114.22°

36.59°

520

H19(1)H20(1)H21(1)H22(1)H23(1)

1

0.00271

1.1538

1.052

0.0362

0.0603

15.38%

 

JNH

12*/5#

Jingnianghu,Hebei

113.98°

36.99°

650

H24(1)H25(1)H26(1)H27(1)H28(1)

1

0.00344

1.3231

1.1861

0.1118

0.169

32.31%

 

XTS

13*/5#

Xiantaishan,Henan

113.73°

36.18°

873

H29(1)H30(1)H31(1)H32(1)H33(1)

1

0.00229

1.2308

1.1345

0.0798

0.1204

23.08%

 

LFS

13*/5#

Lufengshan,Hebei

113.76°

36.49°

1020

H5(1)H34(1)H35(1)H36(1)H37(1)

1

0.00271

1.2923

1.156

0.0962

0.1473

29.23%

 

XT

14*/5#

Xingtaidaxiagu,Hebei

113.94°

37.20°

640

H22(1)H38(1)H39(1)H40(1)H41(1)

1

0.00146

1.2769

1.1354

0.0843

0.131

27.69%

 

GJT

14*/5#

Gaojiatai,Henan

113.68°

36.11°

805

H2(1)H3(1)H42(1)H43(1)H44(1)

1

0.00292

1.3385

1.1701

0.1063

0.1643

33.85%

 

SBY

14*/5#

Shibanyan,Henan

113.72°

36.15°

720

H5(1)H30(1)H45(1)H46(1)H47(1)

1

0.00328

1.2615

1.1663

0.0959

0.1425

26.15%

       

47

0.99327

0.00308

1.7692

1.2532

0.1695

0.2777

76.92%

O. t

WWS

9*/5#

Wangwushan,Henan

112.27°

35.19°

3000

H48(5)

0

0

1

1

0

0

0.00%

 

LQZ

8*/5#

Linqizhen,Henan

113.94°

35.72°

873

H49(1)H50(2)H51(1)H52(1)

0.9

0.00167

1.2308

1.1234

0.074

0.1134

23.08%

 

DSC

12*/5#

Dashuangcun,Shanxi

113.44°

35.56°

868

H52(1)H53(3)H54(1)

0.7

0.00115

1.2154

1.116

0.0709

0.1084

21.54%

 

XYG

8*/5#

Xiyagou,Shanxi

113.60°

35.64°

1268

H50(1)H52(1)H54(1)H55(1)H56(1)

1

0.00094

1.1692

1.1172

0.0662

0.0971

16.92%

 

SNS

9*/5#

Shennongshan,Henan

112.82°

35.21°

1028

H56(1)H57(2)H58(1)H59(1)

0.9

0.00172

1.2462

1.1249

0.0776

0.1197

24.62%

 

LSZT

7*/5#

Linshizuting,Henan

114.01°

35.62°

530

H53(1)H56(1)H60(1)H61(1)H62(1)

1

0.00146

1.2

1.1277

0.0729

0.1084

20.00%

 

BQ

14*/5#

Baoquanshuiku,Henan

113.49°

35.47°

895

H56(1)H63(2)H64(1)H65(1)

0.9

0.00115

1.3231

1.1926

0.1116

0.1676

32.31%

 

WML

14*/5#

Wangmangling,Shanxi

113.58°

35.69°

1421

H60(3)H66(1)H67(1)

0.7

0.00083

1.2154

1.1292

0.0765

0.1148

21.54%

 

WXS

11*/5#

Wanxianshan,Henan

113.61°

35.73°

958

H50(1)H68(1)H69(2)H70(1)

0.9

0.00094

1.2769

1.1457

0.0879

0.1348

27.69%

 

QLX

12*/5#

Qinglongxia,Henan

113.17°

35.40°

841

H50(1)H52(1)H55(3)

0.7

0.00042

1.3385

1.1617

0.0999

0.1561

33.85%

 

GS

13*/5#

Guanshan,Henan

113.54°

35.56°

609

H50(2)H52(1)H53(1)H71(1)

0.9

0.00479

1.2

1.0967

0.0601

0.0937

20.00%

 

JYS

13*/5#

Jingyingsi,Henan

113.20°

35.39°

1006

H50(1)H52(1)H56(1)H72(2)

0.9

0.00146

1.1692

1.0946

0.0557

0.0847

16.92%

 

YMS

12*/5#

Yunmengshan,Henan

114.09°

35.61°

1005

H51(1)H53(1)H73(1)H74(1)H75(1)

1

0.00198

1.1077

1.0395

0.0271

0.0443

10.77%

       

28

0.95399

0.00178

1.7385

1.246

0.1592

0.2585

73.85%

Op

      

75

0.98571

0.0073

1.9385

1.3985

0.246

0.3887

93.85%

  1. O. l, O. longilobus; O. t, O. taihangensis; Op., Opisthopappus; Na, observed number of alleles; Ne, effective number of alleles; H, Nei’s genetic diversity; I, Shannon’s
  2. information index; PPB, the percentage of polymorphic loci