TY - JOUR AU - Ley, R. E. AU - Hamady, M. AU - Lozupone, C. AU - Turnbaugh, P. J. AU - Ramey, R. R. AU - Bircher, J. S. PY - 2008 DA - 2008// TI - Evolution of mammals and their gut microbes JO - Science VL - 320 UR - https://doi.org/10.1126/science.1155725 DO - 10.1126/science.1155725 ID - Ley2008 ER - TY - JOUR AU - Qin, J. AU - Li, R. AU - Raes, J. AU - Arumugam, M. AU - Burgdorf, K. S. AU - Manichanh, C. PY - 2010 DA - 2010// TI - A human gut microbial gene catalogue established by metagenomic sequencing JO - Nature VL - 464 UR - https://doi.org/10.1038/nature08821 DO - 10.1038/nature08821 ID - Qin2010 ER - TY - JOUR AU - Kohl, K. D. PY - 2012 DA - 2012// TI - Diversity and function of the avian gut microbiota JO - J Comp Physiol B VL - 182 UR - https://doi.org/10.1007/s00360-012-0645-z DO - 10.1007/s00360-012-0645-z ID - Kohl2012 ER - TY - JOUR AU - David, L. A. AU - Maurice, C. F. AU - Carmody, R. N. AU - Gootenberg, D. B. AU - Button, J. E. AU - Wolfe, B. E. PY - 2014 DA - 2014// TI - Diet rapidly and reproducibly alters the human gut microbiome JO - Nature VL - 505 UR - https://doi.org/10.1038/nature12820 DO - 10.1038/nature12820 ID - David2014 ER - TY - JOUR AU - Poulsen, M. AU - Hu, H. AU - Li, C. AU - Chen, Z. AU - Xu, L. AU - Otani, S. PY - 2014 DA - 2014// TI - Complementary symbiont contributions to plant decomposition in a fungus-farming termite JO - Proc Natl Acad Sci VL - 111 UR - https://doi.org/10.1073/pnas.1319718111 DO - 10.1073/pnas.1319718111 ID - Poulsen2014 ER - TY - JOUR AU - Shropshire, J. D. AU - Bordenstein, S. R. PY - 2016 DA - 2016// TI - Speciation by symbiosis: the microbiome and behavior JO - MBio VL - 7 UR - https://doi.org/10.1128/mBio.01785-15 DO - 10.1128/mBio.01785-15 ID - Shropshire2016 ER - TY - JOUR AU - Davidson, G. L. AU - Cooke, A. C. AU - Johnson, C. N. AU - Quinn, J. L. PY - 2018 DA - 2018// TI - The gut microbiome as a driver of individual variation in cognition and functional behaviour JO - Philos Trans R Soc B Biol Sci VL - 373 UR - https://doi.org/10.1098/rstb.2017.0286 DO - 10.1098/rstb.2017.0286 ID - Davidson2018 ER - TY - JOUR AU - Suzuki, T. A. AU - Martins, F. M. AU - Phifer-Rixey, M. AU - Nachman, M. W. PY - 2020 DA - 2020// TI - The gut microbiota and Bergmann’s rule in wild house mice JO - Mol Ecol VL - 29 UR - https://doi.org/10.1111/mec.15476 DO - 10.1111/mec.15476 ID - Suzuki2020 ER - TY - JOUR AU - Sharon, G. AU - Segal, D. AU - Ringo, J. M. AU - Hefetz, A. AU - Zilber-Rosenberg, I. AU - Rosenberg, E. PY - 2010 DA - 2010// TI - Commensal bacteria play a role in mating preference of Drosophila melanogaster JO - Proc Natl Acad Sci VL - 107 UR - https://doi.org/10.1073/pnas.1009906107 DO - 10.1073/pnas.1009906107 ID - Sharon2010 ER - TY - JOUR AU - Moeller, A. H. AU - Gomes-Neto, J. C. AU - Mantz, S. AU - Kittana, H. AU - Segura Munoz, R. R. AU - Schmaltz, R. J. PY - 2019 DA - 2019// TI - Experimental evidence for adaptation to species-specific gut microbiota in house mice JO - mSphere. VL - 4 UR - https://doi.org/10.1128/mSphere.00387-19 DO - 10.1128/mSphere.00387-19 ID - Moeller2019 ER - TY - JOUR AU - Grond, K. AU - Sandercock, B. K. AU - Jumpponen, A. AU - Zeglin, L. H. PY - 2018 DA - 2018// TI - The avian gut microbiota: community, physiology and function in wild birds JO - J Avian Biol VL - 49 UR - https://doi.org/10.1111/jav.01788 DO - 10.1111/jav.01788 ID - Grond2018 ER - TY - JOUR AU - Wang, J. AU - Kalyan, S. AU - Steck, N. AU - Turner, L. M. AU - Harr, B. AU - Künzel, S. PY - 2015 DA - 2015// TI - Analysis of intestinal microbiota in hybrid house mice reveals evolutionary divergence in a vertebrate hologenome JO - Nat Commun VL - 6 UR - https://doi.org/10.1038/ncomms7440 DO - 10.1038/ncomms7440 ID - Wang2015 ER - TY - JOUR AU - Brucker, R. M. AU - Bordenstein, S. R. PY - 2012 DA - 2012// TI - Speciation by symbiosis JO - Trends Ecol Evol VL - 27 UR - https://doi.org/10.1016/j.tree.2012.03.011 DO - 10.1016/j.tree.2012.03.011 ID - Brucker2012 ER - TY - JOUR AU - Brucker, R. M. AU - Bordenstein, S. R. PY - 2013 DA - 2013// TI - The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia JO - Science VL - 341 UR - https://doi.org/10.1126/science.1240659 DO - 10.1126/science.1240659 ID - Brucker2013 ER - TY - JOUR AU - Hicks, A. L. AU - Lee, K. J. AU - Couto-Rodriguez, M. AU - Patel, J. AU - Sinha, R. AU - Guo, C. PY - 2018 DA - 2018// TI - Gut microbiomes of wild great apes fluctuate seasonally in response to diet JO - Nat Commun VL - 9 UR - https://doi.org/10.1038/s41467-018-04204-w DO - 10.1038/s41467-018-04204-w ID - Hicks2018 ER - TY - JOUR AU - Keenan, S. W. AU - Engel, A. S. AU - Elsey, R. M. PY - 2013 DA - 2013// TI - The alligator gut microbiome and implications for archosaur symbioses JO - Sci Rep VL - 3 UR - https://doi.org/10.1038/srep02877 DO - 10.1038/srep02877 ID - Keenan2013 ER - TY - JOUR AU - Lewis, W. B. AU - Moore, F. R. AU - Wang, S. PY - 2017 DA - 2017// TI - Changes in gut microbiota of migratory passerines during stopover after crossing an ecological barrier JO - Auk VL - 134 UR - https://doi.org/10.1642/AUK-16-120.1 DO - 10.1642/AUK-16-120.1 ID - Lewis2017 ER - TY - JOUR AU - Michel, A. J. AU - Ward, L. M. AU - Goffredi, S. K. AU - Dawson, K. S. AU - Baldassarre, D. T. AU - Brenner, A. PY - 2018 DA - 2018// TI - The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch JO - Microbiome VL - 6 UR - https://doi.org/10.1186/s40168-018-0555-8 DO - 10.1186/s40168-018-0555-8 ID - Michel2018 ER - TY - JOUR AU - Loo, W. T. AU - Dudaniec, R. Y. AU - Kleindorfer, S. AU - Cavanaugh, C. M. PY - 2019 DA - 2019// TI - An inter-island comparison of Darwin’s finches reveals the impact of habitat, host phylogeny, and island on the gut microbiome JO - PLoS ONE VL - 14 UR - https://doi.org/10.1371/journal.pone.0226432 DO - 10.1371/journal.pone.0226432 ID - Loo2019 ER - TY - JOUR AU - Teyssier, A. AU - Rouffaer, L. O. AU - Saleh Hudin, N. AU - Strubbe, D. AU - Matthysen, E. AU - Lens, L. PY - 2018 DA - 2018// TI - Inside the guts of the city: Urban-induced alterations of the gut microbiota in a wild passerine JO - Sci Total Environ VL - 612 UR - https://doi.org/10.1016/j.scitotenv.2017.09.035 DO - 10.1016/j.scitotenv.2017.09.035 ID - Teyssier2018 ER - TY - JOUR AU - Phillips, J. N. AU - Berlow, M. AU - Derryberry, E. P. PY - 2018 DA - 2018// TI - The Effects of landscape urbanization on the gut microbiome: an exploration into the gut of urban and rural White-crowned sparrows JO - Front Ecol Evol. VL - 6 UR - https://doi.org/10.3389/fevo.2018.00148 DO - 10.3389/fevo.2018.00148 ID - Phillips2018 ER - TY - JOUR AU - Gaona, O. AU - Cerqueda-García, D. AU - Moya, A. AU - Neri-Barrios, X. AU - Falcón, L. I. PY - 2020 DA - 2020// TI - Geographical separation and physiology drive differentiation of microbial communities of two discrete populations of the bat Leptonycteris yerbabuenae JO - Microbiologyopen VL - 9 UR - https://doi.org/10.1002/mbo3.1022 DO - 10.1002/mbo3.1022 ID - Gaona2020 ER - TY - JOUR AU - Grond, K. AU - Santo Domingo, J. W. AU - Lanctot, R. B. AU - Jumpponen, A. AU - Bentzen, R. L. AU - Boldenow, M. L. PY - 2019 DA - 2019// TI - Composition and drivers of gut microbial communities in arctic-breeding shorebirds JO - Front Microbiol. VL - 10 UR - https://doi.org/10.3389/fmicb.2019.02258 DO - 10.3389/fmicb.2019.02258 ID - Grond2019 ER - TY - JOUR AU - Gillingham, M. A. F. AU - Béchet, A. AU - Cézilly, F. AU - Wilhelm, K. AU - Rendón-Martos, M. AU - Borghesi, F. PY - 2019 DA - 2019// TI - Offspring microbiomes differ across breeding sites in a panmictic species JO - Front Microbiol. VL - 10 UR - https://doi.org/10.3389/fmicb.2019.00035 DO - 10.3389/fmicb.2019.00035 ID - Gillingham2019 ER - TY - JOUR AU - Org, E. AU - Parks, B. W. AU - Joo, J. W. J. AU - Emert, B. AU - Schwartzman, W. AU - Kang, E. Y. PY - 2015 DA - 2015// TI - Genetic and environmental control of host-gut microbiota interactions JO - Genome Res VL - 25 UR - https://doi.org/10.1101/gr.194118.115 DO - 10.1101/gr.194118.115 ID - Org2015 ER - TY - JOUR AU - Suzuki, T. A. AU - Phifer-Rixey, M. AU - Mack, K. L. AU - Sheehan, M. J. AU - Lin, D. AU - Bi, K. PY - 2019 DA - 2019// TI - Host genetic determinants of the gut microbiota of wild mice JO - Mol Ecol. UR - https://doi.org/10.1111/mec.15139 DO - 10.1111/mec.15139 ID - Suzuki2019 ER - TY - JOUR AU - Kubinak, J. L. AU - Stephens, W. Z. AU - Soto, R. AU - Petersen, C. AU - Chiaro, T. AU - Gogokhia, L. PY - 2015 DA - 2015// TI - MHC variation sculpts individualized microbial communities that control susceptibility to enteric infection JO - Nat Commun VL - 6 UR - https://doi.org/10.1038/ncomms9642 DO - 10.1038/ncomms9642 ID - Kubinak2015 ER - TY - JOUR AU - Song, S. J. AU - Sanders, J. G. AU - Delsuc, F. AU - Metcalf, J. AU - Amato, K. AU - Taylor, M. W. PY - 2020 DA - 2020// TI - Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats JO - MBio VL - 11 UR - https://doi.org/10.1128/mBio.02901-19 DO - 10.1128/mBio.02901-19 ID - Song2020 ER - TY - JOUR AU - Storchová, R. AU - Reif, J. AU - Nachman, M. W. PY - 2010 DA - 2010// TI - Female heterogamety and speciation: reduced introgression of the Z chromosome between two species of nightingales JO - Evolution (N Y) VL - 64 UR - https://doi.org/10.1111/j.1558-5646.2009.00841.x DO - 10.1111/j.1558-5646.2009.00841.x ID - Storchová2010 ER - TY - JOUR AU - Sorjonen, J. PY - 1986 DA - 1986// TI - Mixed singing and interspecific territoriality - consequences of secondary contact of two ecologically and morphologically similar nightingale species in europe JO - Ornis Scand VL - 17 UR - https://doi.org/10.2307/3676753 DO - 10.2307/3676753 ID - Sorjonen1986 ER - TY - STD TI - Cramp S, Brooks DJ. Handbook of the birds of Europe, the Middle East and North Africa. The birds of the western Palearctic, vol. VI. Warblers. Oxford University. 1992. ID - ref31 ER - TY - JOUR AU - Sottas, C. AU - Reif, J. AU - Kreisinger, J. AU - Schmiedová, L. AU - Sam, K. AU - Osiejuk, T. S. PY - 2020 DA - 2020// TI - Tracing the early steps of competition-driven eco-morphological divergence in two sister species of passerines JO - Evol Ecol UR - https://doi.org/10.1007/s10682-020-10050-4 DO - 10.1007/s10682-020-10050-4 ID - Sottas2020 ER - TY - JOUR AU - Reif, J. AU - Reifová, R. AU - Skoracka, A. AU - Kuczyński, L. PY - 2018 DA - 2018// TI - Competition-driven niche segregation on a landscape scale: evidence for escaping from syntopy towards allotopy in two coexisting sibling passerine species JO - J Anim Ecol VL - 87 UR - https://doi.org/10.1111/1365-2656.12808 DO - 10.1111/1365-2656.12808 ID - Reif2018 ER - TY - JOUR AU - Sottas, C. AU - Reif, J. AU - Kuczyński, L. AU - Reifová, R. PY - 2018 DA - 2018// TI - Interspecific competition promotes habitat and morphological divergence in a secondary contact zone between two hybridizing songbirds JO - J Evol Biol VL - 31 UR - https://doi.org/10.1111/jeb.13275 DO - 10.1111/jeb.13275 ID - Sottas2018 ER - TY - JOUR AU - Xue, Z. AU - Zhang, W. AU - Wang, L. AU - Hou, R. AU - Zhang, M. AU - Fei, L. PY - 2015 DA - 2015// TI - The bamboo-eating giant panda harbors a carnivore-like gut microbiota, with excessive seasonal variations JO - MBio VL - 6 UR - https://doi.org/10.1128/mBio.00022-15 DO - 10.1128/mBio.00022-15 ID - Xue2015 ER - TY - JOUR AU - Stadie, C. PY - 1991 DA - 1991// TI - Erdsanger I; Nachtigall und Sprosser JO - Eur Vogelwelt Vogelwelt VL - 3 ID - Stadie1991 ER - TY - JOUR AU - Reifová, R. AU - Kverek, P. AU - Reif, J. PY - 2011 DA - 2011// TI - The first record of a female hybrid between the Common Nightingale (Luscinia megarhynchos) and the Thrush Nightingale (Luscinia luscinia) in nature JO - J Ornithol VL - 152 UR - https://doi.org/10.1007/s10336-011-0700-7 DO - 10.1007/s10336-011-0700-7 ID - Reifová2011 ER - TY - JOUR AU - Mořkovský, L. AU - Janoušek, V. AU - Reif, J. AU - Rídl, J. AU - Pačes, J. AU - Choleva, L. PY - 2018 DA - 2018// TI - Genomic islands of differentiation in two songbird species reveal candidate genes for hybrid female sterility JO - Mol Ecol VL - 27 UR - https://doi.org/10.1111/mec.14479 DO - 10.1111/mec.14479 ID - Mořkovský2018 ER - TY - JOUR AU - Reifová, R. AU - Reif, J. AU - Antczak, M. AU - Nachman, M. W. PY - 2011 DA - 2011// TI - Ecological character displacement in the face of gene flow: evidence from two species of nightingales JO - BMC Evol Biol VL - 11 UR - https://doi.org/10.1186/1471-2148-11-138 DO - 10.1186/1471-2148-11-138 ID - Reifová2011 ER - TY - JOUR AU - Janoušek, V. AU - Fischerová, J. AU - Mořkovský, L. AU - Reif, J. AU - Antczak, M. AU - Albrecht, T. PY - 2019 DA - 2019// TI - Postcopulatory sexual selection reduces Z-linked genetic variation and might contribute to the large Z effect in passerine birds JO - Heredity VL - 122 UR - https://doi.org/10.1038/s41437-018-0161-3 DO - 10.1038/s41437-018-0161-3 ID - Janoušek2019 ER - TY - JOUR AU - Moeller, A. H. AU - Suzuki, T. A. AU - Lin, D. AU - Lacey, E. A. AU - Wasser, S. K. AU - Nachman, M. W. PY - 2017 DA - 2017// TI - Dispersal limitation promotes the diversification of the mammalian gut microbiota JO - Proc Natl Acad Sci VL - 114 UR - https://doi.org/10.1073/pnas.1700122114 DO - 10.1073/pnas.1700122114 ID - Moeller2017 ER - TY - JOUR AU - Linnenbrink, M. AU - Wang, J. AU - Hardouin, E. A. AU - Künzel, S. AU - Metzler, D. AU - Baines, J. F. PY - 2013 DA - 2013// TI - The role of biogeography in shaping diversity of the intestinal microbiota in house mice JO - Mol Ecol VL - 22 UR - https://doi.org/10.1111/mec.12206 DO - 10.1111/mec.12206 ID - Linnenbrink2013 ER - TY - JOUR AU - Hird, S. M. PY - 2017 DA - 2017// TI - Evolutionary biology needs wild microbiomes JO - Front Microbiol. VL - 8 UR - https://doi.org/10.3389/fmicb.2017.00725 DO - 10.3389/fmicb.2017.00725 ID - Hird2017 ER - TY - JOUR AU - Lindsey, A. R. I. AU - Rice, D. W. AU - Bordenstein, S. R. AU - Brooks, A. W. AU - Bordenstein, S. R. AU - Newton, I. L. G. PY - 2018 DA - 2018// TI - Evolutionary genetics of cytoplasmic incompatibility genes cifA and cifB in prophage WO of Wolbachia JO - Genome Biol Evol VL - 10 UR - https://doi.org/10.1093/gbe/evy012 DO - 10.1093/gbe/evy012 ID - Lindsey2018 ER - TY - JOUR AU - Trevelline, B. K. AU - Sosa, J. AU - Hartup, B. K. AU - Kohl, K. D. PY - 2020 DA - 2020// TI - A bird’s-eye view of phylosymbiosis: weak signatures of phylosymbiosis among all 15 species of cranes JO - Proc R Soc B Biol Sci VL - 287 UR - https://doi.org/10.1098/rspb.2019.2988 DO - 10.1098/rspb.2019.2988 ID - Trevelline2020 ER - TY - JOUR AU - Youngblut, N. D. AU - Reischer, G. H. AU - Walters, W. AU - Schuster, N. AU - Walzer, C. AU - Stalder, G. PY - 2019 DA - 2019// TI - Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades JO - Nat Commun VL - 10 UR - https://doi.org/10.1038/s41467-019-10191-3 DO - 10.1038/s41467-019-10191-3 ID - Youngblut2019 ER - TY - JOUR AU - Kropáčková, L. AU - Těšický, M. AU - Albrecht, T. AU - Kubovčiak, J. AU - Čížková, D. AU - Tomášek, O. PY - 2017 DA - 2017// TI - Codiversification of gastrointestinal microbiota and phylogeny in passerines is not explained by ecological divergence JO - Mol Ecol VL - 26 UR - https://doi.org/10.1111/mec.14144 DO - 10.1111/mec.14144 ID - Kropáčková2017 ER - TY - JOUR AU - Suzuki, T. A. AU - Worobey, M. PY - 2014 DA - 2014// TI - Geographical variation of human gut microbial composition JO - Biol Lett VL - 10 UR - https://doi.org/10.1098/rsbl.2013.1037 DO - 10.1098/rsbl.2013.1037 ID - Suzuki2014 ER - TY - JOUR AU - Hird, S. M. AU - Carstens, B. C. AU - Cardiff, S. W. AU - Dittmann, D. L. AU - Brumfield, R. T. PY - 2014 DA - 2014// TI - Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater) JO - PeerJ VL - 2 UR - https://doi.org/10.7717/peerj.321 DO - 10.7717/peerj.321 ID - Hird2014 ER - TY - JOUR AU - Banks, J. C. AU - Cary, S. C. AU - Hogg, I. D. PY - 2009 DA - 2009// TI - The phylogeography of Adelie penguin faecal flora JO - Environ Microbiol VL - 11 UR - https://doi.org/10.1111/j.1462-2920.2008.01816.x DO - 10.1111/j.1462-2920.2008.01816.x ID - Banks2009 ER - TY - JOUR AU - Hird, S. M. AU - Sánchez, C. AU - Carstens, B. C. AU - Brumfield, R. T. PY - 2015 DA - 2015// TI - Comparative gut microbiota of 59 neotropical bird species JO - Front Microbiol. UR - https://doi.org/10.3389/fmicb.2015.01403 DO - 10.3389/fmicb.2015.01403 ID - Hird2015 ER - TY - JOUR AU - Pigot, A. L. AU - Tobias, J. A. PY - 2015 DA - 2015// TI - Dispersal and the transition to sympatry in vertebrates JO - Proc R Soc B Biol Sci VL - 282 UR - https://doi.org/10.1098/rspb.2014.1929 DO - 10.1098/rspb.2014.1929 ID - Pigot2015 ER - TY - JOUR AU - Hahn, S. AU - Amrhein, V. AU - Zehtindijev, P. AU - Liechti, F. PY - 2013 DA - 2013// TI - Strong migratory connectivity and seasonally shifting isotopic niches in geographically separated populations of a long-distance migrating songbird JO - Oecologia VL - 173 UR - https://doi.org/10.1007/s00442-013-2726-4 DO - 10.1007/s00442-013-2726-4 ID - Hahn2013 ER - TY - JOUR AU - Kropáčková, L. AU - Pechmanová, H. AU - Vinkler, M. AU - Svobodová, J. AU - Velová, H. AU - Těšičký, M. PY - 2017 DA - 2017// TI - Variation between the oral and faecal microbiota in a free-living passerine bird, the great tit (Parus major) JO - PLoS ONE VL - 12 UR - https://doi.org/10.1371/journal.pone.0179945 DO - 10.1371/journal.pone.0179945 ID - Kropáčková2017 ER - TY - JOUR AU - Bodawatta, K. H. AU - Sam, K. AU - Jønsson, K. A. AU - Poulsen, M. PY - 2018 DA - 2018// TI - Comparative analyses of the digestive tract microbiota of new guinean passerine birds JO - Front Microbiol. VL - 9 UR - https://doi.org/10.3389/fmicb.2018.01830 DO - 10.3389/fmicb.2018.01830 ID - Bodawatta2018 ER - TY - JOUR AU - Lewis, W. B. AU - Moore, F. R. AU - Wang, S. PY - 2016 DA - 2016// TI - Characterization of the gut microbiota of migratory passerines during stopover along the northern coast of the Gulf of Mexico JO - J Avian Biol VL - 47 UR - https://doi.org/10.1111/jav.00954 DO - 10.1111/jav.00954 ID - Lewis2016 ER - TY - JOUR AU - García-Amado, M. A. AU - Shin, H. AU - Sanz, V. AU - Lentino, M. AU - Martínez, L. M. AU - Contreras, M. PY - 2018 DA - 2018// TI - Comparison of gizzard and intestinal microbiota of wild neotropical birds JO - PLoS ONE VL - 13 UR - https://doi.org/10.1371/journal.pone.0194857 DO - 10.1371/journal.pone.0194857 ID - García-Amado2018 ER - TY - JOUR AU - Berlow, M. AU - Kohl, K. D. AU - Derryberry, E. P. PY - 2020 DA - 2020// TI - Evaluation of non-lethal gut microbiome sampling methods in a passerine bird JO - Ibis (Lond 1859). VL - 162 UR - https://doi.org/10.1111/ibi.12807 DO - 10.1111/ibi.12807 ID - Berlow2020 ER - TY - JOUR AU - Zhang, Y. AU - Simon, S. E. AU - Johnson, J. A. AU - Allen, M. S. PY - 2017 DA - 2017// TI - Spatial microbial composition along the gastrointestinal tract of captive Attwater’s prairie chicken JO - Microb Ecol VL - 73 UR - https://doi.org/10.1007/s00248-016-0870-1 DO - 10.1007/s00248-016-0870-1 ID - Zhang2017 ER - TY - JOUR AU - Klindworth, A. AU - Pruesse, E. AU - Schweer, T. AU - Peplies, J. AU - Quast, C. AU - Horn, M. PY - 2013 DA - 2013// TI - Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gks808 DO - 10.1093/nar/gks808 ID - Klindworth2013 ER - TY - JOUR AU - Jiang, H. AU - Lei, R. AU - Ding, S. -. W. AU - Zhu, S. PY - 2014 DA - 2014// TI - Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads JO - BMC Bioinform VL - 15 UR - https://doi.org/10.1186/1471-2105-15-182 DO - 10.1186/1471-2105-15-182 ID - Jiang2014 ER - TY - JOUR AU - Callahan, B. J. AU - McMurdie, P. J. AU - Rosen, M. J. AU - Han, A. W. AU - Johnson, A. J. A. AU - Holmes, S. P. PY - 2016 DA - 2016// TI - DADA2: High-resolution sample inference from Illumina amplicon data JO - Nat Methods VL - 13 UR - https://doi.org/10.1038/nmeth.3869 DO - 10.1038/nmeth.3869 ID - Callahan2016 ER - TY - JOUR AU - Edgar, R. C. AU - Haas, B. J. AU - Clemente, J. C. AU - Quince, C. AU - Knight, R. PY - 2011 DA - 2011// TI - UCHIME improves sensitivity and speed of chimera detection JO - Bioinformatics VL - 27 UR - https://doi.org/10.1093/bioinformatics/btr381 DO - 10.1093/bioinformatics/btr381 ID - Edgar2011 ER - TY - JOUR AU - Wang, Q. AU - Garrity, G. M. AU - Tiedje, J. M. AU - Cole, J. R. PY - 2007 DA - 2007// TI - Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy JO - Appl Environ Microbiol VL - 73 UR - https://doi.org/10.1128/AEM.00062-07 DO - 10.1128/AEM.00062-07 ID - Wang2007 ER - TY - JOUR AU - Quast, C. AU - Pruesse, E. AU - Yilmaz, P. AU - Gerken, J. AU - Schweer, T. AU - Yarza, P. PY - 2013 DA - 2013// TI - The SILVA ribosomal RNA gene database project: improved data processing and web-based tools JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gks1219 DO - 10.1093/nar/gks1219 ID - Quast2013 ER - TY - JOUR AU - Knight, A. AU - Ewen, J. G. AU - Brekke, P. AU - Santure, A. W. PY - 2018 DA - 2018// TI - The evolutionary biology, ecology and epidemiology of Coccidia of Passerine birds JO - Adv Parasitol VL - 99 UR - https://doi.org/10.1016/bs.apar.2018.01.001 DO - 10.1016/bs.apar.2018.01.001 ID - Knight2018 ER - TY - JOUR AU - McMurdie, P. J. AU - Holmes, S. PY - 2013 DA - 2013// TI - Phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0061217 DO - 10.1371/journal.pone.0061217 ID - McMurdie2013 ER - TY - JOUR AU - Bates, D. AU - Mächler, M. AU - Bolker, B. AU - Walker, S. PY - 2015 DA - 2015// TI - Fitting linear mixed-effects models using lme4 JO - J Stat Softw. UR - https://doi.org/10.18637/jss.v067.i01 DO - 10.18637/jss.v067.i01 ID - Bates2015 ER - TY - JOUR AU - Oksanen, A. J. AU - Blanchet, G. F. AU - Friendly, M. AU - Kindt, R. AU - Legendre, P. AU - Mcglinn, D. PY - 2016 DA - 2016// TI - The vegan package JO - Community Ecol Packag VL - 10 ID - Oksanen2016 ER - TY - JOUR AU - Legendre, P. AU - Andersson, M. J. PY - 1999 DA - 1999// TI - Distance-based redundancy analysis: testing multispecies responses in multifactorial ecological experiments JO - Ecol Monogr VL - 69 UR - https://doi.org/10.1890/0012-9615(1999)069[0001:DBRATM]2.0.CO;2 DO - 10.1890/0012-9615(1999)069[0001:DBRATM]2.0.CO;2 ID - Legendre1999 ER - TY - JOUR AU - Dray, S. AU - Dufour, A. -. B. PY - 2007 DA - 2007// TI - The ade4 package: implementing the duality diagram for ecologists JO - J Stat Softw VL - 22 UR - https://doi.org/10.18637/jss.v022.i04 DO - 10.18637/jss.v022.i04 ID - Dray2007 ER - TY - STD TI - Kindt R, Coe R. Tree diversity analysis: a manual and software for common statistical methods for ecological and biodiversity studies. World Agroforestry Centre; 2005. ID - ref72 ER - TY - JOUR AU - Brooks, M. E. AU - Kristensen, K. AU - Benthem, K. J. AU - Magnusson, A. AU - Berg, C. W. AU - Nielsen, A. PY - 2017 DA - 2017// TI - GlmmTMB balances speed and flexibility among packages for zero-inflated generalized linear mixed modeling JO - R J VL - 9 UR - https://doi.org/10.32614/RJ-2017-066 DO - 10.32614/RJ-2017-066 ID - Brooks2017 ER - TY - JOUR AU - Benjamini, Y. AU - Hochberg, Y. PY - 1995 DA - 1995// TI - Controlling the false discovery rate: a practical and powerful approach to multiple testing JO - J R Stat Soc VL - 57 ID - Benjamini1995 ER -