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Fig. 2 | BMC Ecology and Evolution

Fig. 2

From: Signal, bias, and the role of transcriptome assembly quality in phylogenomic inference

Fig. 2

Summary statistics for the high- and low-quality datasets produced. We selected high- and low- quality datasets based on TransRate score. This resulted in transcriptome assemblies with both high and low completeness, according to complete BUSCO score, in each dataset. Larger assembles in the low-quality dataset did not lead to higher BUSCO or TransRate scores. Dotted lines in density plots represent medians for each dataset. a Density plot of the total number of transcripts (in thousands) in each transcriptome. b Relationship between the total number of transcripts (in thousands) and the total number of orthogroups. c Density plot of overall TransRate scores for each assembly. d Relationship between the overall TransRate score and the total number or orthogroups. e Density plot of complete BUSCO score for each transcriptome assembly. f Relationship between BUSCO score and total number of orthogroups

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