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Table 4 Summary statistics of putative cis-elements present in the 2 kb upstream promoter region of FTs across nine species

From: Genome-wide characterization of PEBP family genes in nine Rosaceae tree species and their expression analysis in P. mume

TF Family Organism Motif Description A. thaliana Populus trichocarpa M. domestica Pyrus communis R. occidentalis P. armeniaca P. avium P. mume P. persica
AtFT PtFT1 PtFT2 MdFT PcFT1 RoFT1 RoFT2 PaFT PvFT PmFT PpFT
CCACA box A. thaliana CCACA Binding site for CO 5 4 0 6 5 3 10 6 6 6 6
CArG box A. thaliana CC[A/T]6GG Binding site for MADS-domain transcription factor 10 1 3 2 2 1 2 2 4 3 5
MYB A. thaliana CAACAG Binding site for MYB transcription factor 5 3 1 2 3 4 5 3 3 3 2
bHLH A. thaliana ATGTG/AGGTG Binding site for MYC 7 3 3 5 16 8 6 7 6 6 4
TCT-motif A. thaliana TCTTAC Part of a light-responsive element 2 2 0 2 1 2 0 4 3 3 3
GATA-motif A. thaliana AAGATAAGATT Part of a light-responsive element 0 1 0 1 1 2 2 0 0 0 0
AE-box A. thaliana AGAAACAA Part of a module for light response 2 0 1 1 0 0 0 0 0 0 1
G-box A. thaliana TACGTG Cis-acting regulatory element involved in light responsiveness 2 1 1 1 2 2 2 3 1 3 2
GT1-motif A. thaliana GGTTAA Light-responsive element 2 1 2 0 0 0 2 3 2 3 3
MSA-like   (T/C)C(T/C)AACGG(T/C)(T/C)A Cis-regulatory element involved in cell cycle regulation 0 0 0 2 0 0 0 0 0 0 0
GARE-motif Brassica oleracea TCTGTTG Gibberellin-responsive element 0 0 0 1 1 1 0 0 1 0 0
P-box Oryza sativa CCTTTTG Gibberellin-responsive element 1 0 1 0 0 0 0 1 1 1 1
AP2; ERF A. thaliana CCGAC Ethylene-responsive transcription factor 7 3 5 8 6 8 6 2 4 2 4
ABRE A. thaliana ACGTG Cis-acting element involved in the abscisic acid responsiveness 1 3 2 1 4 4 5 2 1 2 1
LTR Hordeum vulgare CCGAAA Cis-acting element involved in low-temperature responsiveness 1 0 0 0 1 1 0 0 1 1 0
W box A. thaliana CCGAAA Binding site for WRKY transcription factor 0 0 2 0 0 1 1 1 1 1 1
  1. The organism column indicates in which organism the motif was characterized