Gene count from target sequence capture places three whole genome duplication events in Hibiscus L. (Malvaceae)

Table 1 Mean read depth across all base pairs per species per gene

	Mean read depth (coverage across all assemblies) per locus
Gene	H. cannabinus1	H. cannabinus2	H. cannabinus3	H. mechowii	H. trionum	P. triloba
ABC-C2	206	120	180	324	66	53
ACCS	231	179	172	284	42	38
Acylamino	480	300	330	823	122	76
AglucanP	411	638	597	399	171	112
Ankyrin	239	151	145	315	91	77
Bgalactosidase8	256	193	178	322	57	70
CAD	406	295	270	381	60	57
Calcium11	494	293	315	600	75	158
Calcium-ATPase1	215	195	196	287	73	72
Calcium-ATPase3*	338	217	243	460	87	76
Callose*	93	84	222	91	42	45
CesA1	200	209	147	255	79	116
DEAD-ATP*	324	308	284	150	87	90
EIF-2B	133	96	98	160	23	35
F5H	232	200	172	268	66	52
Formin2	141	117	109	151	31	27
Glutamine	425	302	349	744	158	85
GPDH	297	264	258	459	136	100
Importin4*	413	271	328	538	55	109
Kinesin-KCA2*	268	233	276	291	76	87
Kinesin-Kp1	333	410	398	473	106	44
LOC105792102	187	153	137	221	58	58
MAP3K	385	280	274	441	102	78
Mechanosensitive*	481	467	481	622	195	143
MNS4*	299	276	220	353	91	83
NF-X1-zinc*	274	282	271	429	100	85
Oxysterol-1D*	1103	1224	1095	2002	323	316
Phospholipase	212	178	178	299	62	65
Plasma-ATPase	216	189	174	238	73	56
Polysub2*	428	562	220	798	170	161
RRP5*	404	307	311	410	103	114
SBT3-5*	591	467	451	−	136	102
SD1-1*	628	495	524	685	127	116
TGH*	743	560	570	405	172	162
Mean coverage across all loci	312	261	259	371	87	80

The average read coverage is calculated across all contigs and per exons for each gene. Asterisks (*) refer to genes that have only one sequence copy per species (e.g. single copy genes)

ISSN: 2730-7182