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Table 2 Diversity estimates within Jaculus species

From: Evolutionary history of two cryptic species of northern African jerboas

Locus Species L n S H Hd(SD) π (SD)% θW (SD)% D FS R2
Cytb J. jaculus 897 96 156 87 0.997 (0.002) 1.61 (0.09) 3.39 (0.86) −1.84** −89.13*** 0.04**
J. hirtipes 897 137 102 83 0.980 (0.005) 0.58 (0.03) 2.07 (0.51) −2.35*** − 107.96*** 0.02***
DBX5 J. jaculus 311 84 3 4 0.220 (0.059) 0.09 (0.03) 0.20 (0.10) −1.02 −1.96 0.04
J. hirtipes 306 180 7 8 0.208 (0.040) 0.07 (0.01) 0.40 (0.20) −1.77* −8.94*** 0.02
DBX5 non-rec J. jaculus 301 84 2 3 0.217 (0.057) 0.07 (0.02) 0.10 (0.10) −0.71 −0.95 0.06
J. hirtipes 296 171 6 7 0.166 (0.038) 0.06 (0.01) 0.40 (0.20) −1.73 −8.21*** 0.02
ADRA2B J. jaculus 693 72 7 9 0.705 (0.031) 0.30 (0.02) 0.20 (0.20) 0.32 −0.87 0.13
J. hirtipes 693 180 11 11 0.345 (0.045) 0.06 (0.01) 0.30 (0.10) −1.85* −9.67* 0.02
GHR J. jaculus 798 80 10 11 0.378 (0.070) 0.05 (0.01) 0.20 (0.10) −2.09* −12.09** 0.03*
J. hirtipes 798 183 11 10 0.147 (0.036) 0.03 (0.008) 0.20 (0.09) −2.12* −12.93*** 0.02*
IRBP J. jaculus 1058 50 25 19 0.905 (0.023) 0.35 (0.05) 0.53 (0.20) −1.07 −6.48 0.07*
J. hirtipes 1058 106 23 35 0.948 (0.010) 0.39 (0.002) 0.41 (0.13) −0.19 −19.37 0.09
ʋWF J. jaculus 873 40 31 23 0.938 (0.026) 0.57 (0.07) 0.83 (0.28) −1.11 −10.77 0.08*
J. hirtipes 874 132 33 37 0.933 (0.012) 0.56 (0.02) 0.69 (0.20) −0.70 −15.72 0.07
ʋWF non-rec J. jaculus 516 26 6 6 0.717 (0.079) 0.38 (0.05) 0.30 (0.15) 0.76 0.14 0.16
J. hirtipes 514 127 18 14 0.861 (0.016) 0.44 (0.27) 0.65 (0.21) −0.89 −2.48 0.06
Agouti J. jaculus 453 66 14 12 0.746 (0.037) 0.39 (0.05) 0.65 (0.24) −0.06 − 0.06* 0.10***
J. hirtipes 461 162 14 15 0.765 (0.021) 1.07 (0.02) 0.54 (0.18) −0.09* −0.36 0.08***
MC1R J. jaculus 894 56 9 11 0.890 (0.016) 0.19 (0.01) 0.22 (0.09) −0.06 −0.08 0.11
J. hirtipes 894 110 13 19 0.890 (0.019) 0.25 (0.02) 0.28 (0.10) −0.06 −0.21* 0.09
  1. In loci with significant levels of within-locus recombination, values are shown for the recombinant and non-recombinant datasets (denoted as “non-rec’”)
  2. L number of sites excluding gaps, n number of sequences, S number of segregating sites, H number of haplotypes, Hd haplotype diversity, π nucleotide diversity per site, θW computed from the number of segregating sites, D Tajima’s D, FS Fu’s FS, R2 Ramos-Onsins & Rozas’s R2
  3. Significant values indicated *(P < 0.05), **(P < 0.01), ***(P < 0.001)