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Table 1 Corallium rubrum proteins identified in the axial skeleton and the sclerites

From: The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

CR_n Transcript accession n° Description Protein family Presence in the genome
CR_1 TRINITY_DN57230_c0_g1_i1 Scleritin (UOMP)   
CR_2 TRINITY_DN62338_c1_g1_i2 Sushi domain-containing 2-like Mucin  
CR_3_4 scaff2294:c99220-62,422 CAP-like CAP Yes
CR_5 TRINITY_DN53149_c0_g1_i1 Collagen triple helix repeat Collagen Yes
CR_6 TRINITY_DN55882_c0_g1_i1 Fibrinogen-related   
CR_7 TRINITY_DN63002_c0_g1_i7 Low-density lipo receptor-related like 4 LRP  
CR_8 TRINITY_DN56567_c4_g1_i4 UOMP   Yes
CR_9 TRINITY_DN52968_c0_g1_i1 Collagen α -1(V) chain Collagen Yes
CR_10_28_60 scaff2907:c1055600-1,011,000 Agrin-1 Agrin Yes
CR_11 TRINITY_DN58426_c1_g1_i1 ?   
CR_12 TRINITY_DN58029_c4_g3_i1 Tyrosinase   
CR_13 TRINITY_DN58119_c0_g1_i1 ?   
CR_14 TRINITY_DN62074_c1_g1_i7 Galaxin (UOMP) Galaxin  
CR_15 TRINITY_DN63296_c1_g4_i3 Melanotransferrin-like   
CR_16 TRINITY_DN56632_c0_g3_i1 MMP12A Peptidase (zinc)  
CR_17 TRINITY_DN52633_c0_g1_i1 Collagen α -1(XI) chain Collagen  
CR_18 TRINITY_DN62446_c0_g1_i1 ?   
CR_19 TRINITY_DN51464_c0_g1_i1 Agrin Agrin  
CR_20 TRINITY_DN57322_c0_g1_i1 MMP12B PEPTIDASE (zinc)  
CR_21 TRINITY_DN52133_c0_g1_i1 NA Sugar-binding Yes
CR_22 TRINITY_DN60196_c2_g6_i1 ? Sugar-binding Yes
CR_23 TRINITY_DN61543_c0_g1_i1 Plexin domain-containing protein   
CR_24 TRINITY_DN64090_c0_g1_i6 Protocadherin like Protocadherin  
CR_25 TRINITY_DN58830_c0_g1_i1 NA Frizzled domain Yes
CR_26 TRINITY_DN58830_c0_g4_i2 NA Frizzled domain Yes
CR_27 TRINITY_DN61967_c0_g2_i2 Galaxin (UOMP) Galaxin  
CR_29 TRINITY_DN45133_c0_g1_i1 CruCA4   
CR_30 TRINITY_DN63986_c2_g1_i1 Peptidase S8 Peptidase (serine)  
CR_31 TRINITY_DN48716_c1_g1_i1 NA   Yes
CR_32 TRINITY_DN63619_c0_g1_i8 ?   
CR_33 TRINITY_DN55669_c0_g3_i8 UOMP   Yes
CR_34 TRINITY_DN63069_c2_g1_i2 Protocadherin Fat 4 Protocadherin  
CR_35 TRINITY_DN58620_c3_g1_i1 Collagen α -1(III) chain Collagen Yes
CR_36 TRINITY_DN62341_c4_g3_i7 NA   Yes
CR_37 TRINITY_DN56000_c0_g2_i3 UOMP   Yes
CR_38 TRINITY_DN54322_c0_g1_i1 Collagen α -2(I) chain Collagen Yes
CR_39 TRINITY_DN53417_c0_g1_i4 Collagen α -1(VI) chain Collagen Yes
CR_40 TRINITY_DN62648_c2_g1_i1 Transmembrane protease serine 9 GliPR  
CR_41 TRINITY_DN41663_c0_g1_i1 Exostosin-3 GAG_elongation  
CR_42 TRINITY_DN63404_c0_g2_i1 Peptidyl-glycine α -amidating monooxygenase PAL_PHM_PAM  
CR_43 TRINITY_DN48082_c0_g1_i1 Renin receptor   
CR_44 TRINITY_DN51483_c0_g1_i1 V-type proton ATPase subunit S1-like   
CR_45 TRINITY_DN63929_c2_g1_i5 Pentraxin Sugar-binding  
CR_46 TRINITY_DN63365_c0_g1_i3 Peptidyl-α-Hydroxyglycine α-amidating lyase PAL_PHM_PAM  
CR_47 TRINITY_DN62037_c1_g1_i1 NA Sugar-binding Yes
CR_48 TRINITY_DN63397_c3_g1_i3 UOMP   Yes
CR_49 TRINITY_DN61472_c0_g2_i3 Cytoplasmic Actin   
CR_50 TRINITY_DN60827_c2_g2_i3 Collagen α -2(V) chain Collagen  
CR_51 TRINITY_DN63041_c1_g1_i2 Complement component C3 precursor   
CR_52 TRINITY_DN63149_c1_g3_i3 Cystatin Peptidase inhibitor  
CR_53 TRINITY_DN58234_c0_g2_i1 Agrin Agrin  
CR_54 TRINITY_DN61441_c0_g1_i3 Collagen α -1(II) chain isoform X2 Collagen  
CR_55 TRINITY_DN51187_c0_g2_i2 UOMP   
CR_56 TRINITY_DN63166_c7_g6_i1 Collagen α -1(I) chain-like Collagen  
CR_57 TRINITY_DN54300_c1_g1_i1 Pentraxin Sugar-binding  
CR_58 TRINITY_DN58073_c0_g1_i1 Pikachurin-like Sugar-binding  
CR_59 TRINITY_DN64032_c0_g1_i3 α -2-Macroglobulin 1 isoform X2   
CR_62_76_82 scaff2512:c157700-123,800 Agrin-2 Agrin Yes
CR_61 TRINITY_DN61195_c0_g1_i1 MMP13 Peptidase (zinc)  
CR_63 TRINITY_DN45588_c0_g1_i1 Tenascin-like   
CR_64 TRINITY_DN63439_c12_g3_i1 MMP12A Peptidase (zinc)  
CR_65 TRINITY_DN56377_c0_g1_i2 CUB and sushi Domain-containing 3 Sugar-binding  
CR_66 TRINITY_DN51686_c0_g1_i1 Superoxide dismutase [Cu–Zn]   
CR_67 TRINITY_DN58794_c0_g8_i1 UBA52   
CR_68 TRINITY_DN63204_c1_g1_i3 Collagen α -1(I) chain Collagen  
CR_69 TRINITY_DN63340_c1_g2_i1 Zinc transporter ZIP14   
CR_70 TRINITY_DN62875_c0_g2_i2 Protein kinase C-binding protein NELL1 Sugar-binding  
CR_71 TRINITY_DN43523_c0_g1_i1 ?   
CR_72 TRINITY_DN53651_c2_g1_i1 UOMP   
CR_73 TRINITY_DN30803_c0_g2_i1 Calumenin EFh_CREC_cab45  
CR_74 TRINITY_DN53562_c0_g1_i1 Bactericidal permeability-increasing-like   
CR_75 TRINITY_DN39424_c0_g1_i1 UOMP   Yes
CR_77 TRINITY_DN62341_c4_g3_i6 NA   Yes
CR_78 TRINITY_DN58182_c1_g1_i1 UOMP   
CR_79 TRINITY_DN61728_c0_g3_i8 Sialate O-acetylesterase   
CR_80 TRINITY_DN56386_c0_g1_i1 UOMP   
CR_81 TRINITY_DN61964_c1_g1_i4 Cathepsin Z Peptidase (cysteine)  
CR_83 TRINITY_DN56964_c4_g1_i1 Thrombospondin-type laminin G domain and EAR repeat-containing protein   
CR_84 TRINITY_DN54518_c0_g1_i3 NA   Yes
CR_85 TRINITY_DN63555_c0_g1_i5 ? Sugar-binding Yes
CR_86 TRINITY_DN43665_c0_g1_i1 45 kDa calcium-binding EFh_CREC_cab45  
CR_87 TRINITY_DN63601_c0_g1_i2 Transforming growth factor-β-induced ig-h3-like   
CR_88 TRINITY_DN19382_c0_g1_i1 UOMP   Yes
CR_89 TRINITY_DN55648_c0_g1_i2 ?   
CR_90 TRINITY_DN62899_c0_g1_i1 Peptidase S9 Peptidase (serine)  
CR_91 TRINITY_DN37336_c0_g1_i1 UOMP   Yes*
CR_92 TRINITY_DN60582_c0_g1_i2 Haem peroxidase Haem peroxidase  
CR_93 TRINITY_DN30927_c0_g2_i1 Prolyl 4-hydroxylase-like P4H  
CR_94 TRINITY_DN57626_c0_g3_i10 UOMP   Yes
CR_95 TRINITY_DN58599_c0_g1_i3 ?   Yes
CR_96 TRINITY_DN12946_c0_g1_i1 Gamma-glutamyl-transpeptidase   
CR_97 TRINITY_DN55829_c0_g1_i3 NA Sugar-binding Yes
CR_98 TRINITY_DN57865_c0_g2_i3 von Willebrand factor, type A   
CR_99 TRINITY_DN64024_c5_g1_i3 Histone H4   
CR_100 TRINITY_DN59633_c0_g1_i1 Adhesion G-coupled receptor D1   
CR_101 TRINITY_DN55506_c0_g1_i1 Low-density lipo receptor-related 6 LRP  
CR_102 TRINITY_DN36837_c0_g1_i1 Histone H2B type 2-E-like   
CR_103 TRINITY_DN53166_c0_g1_i1 UOMP   Yes
CR_104 TRINITY_DN61990_c1_g1_i7 NA   Yes
CR_105 TRINITY_DN55043_c0_g1_i2 UOMP   
CR_106 TRINITY_DN59627_c2_g1_i13 UOMP   Yes
CR_107 TRINITY_DN61728_c0_g3_i1 Sialate O-acetylesterase   
  1. Proteins are presented by: number of identified proteins (CR_n), accession number of the corresponding transcript from transcriptomic CrubmRNA.fasta database of the Centre Scientifique de Monaco, description of proteins, protein family and presence of encoding gene in C. rubrum genome. UOMP uncharacterized organic matrix protein; ?: unknown protein but containing characterized domains, NA not annotated; Yes*: presence in C. rubrum genome but no intron