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Table 1 CBF/DREB1 proteins identified in 43 sequenced plant genomes

From: Evolutionary history of the C-repeat binding factor/dehydration-responsive element-binding 1 (CBF/DREB1) protein family in 43 plant species and characterization of CBF/DREB1 proteins in Solanum tuberosum

Lineage

Organism (Abbr.)

Numbers of CBF protein

Tandem duplication (pairs)

Segmental duplication (pairs)

Numbers of group I

Numbers of group II

Numbers of group III

Numbers of group IV

Numbers of group V

Algae

 

Chlamydomonas reinhardtii (Cr)

0

0

0

0

0

0

0

0

 

Volvox carteri (Vc)

0

0

0

0

0

0

0

0

Mosses

 

Marchantia polymorpha (Mp)

0

0

0

0

0

0

0

0

 

Physcomitrella patens (Ph)

0

0

0

0

0

0

0

0

Ferns

 

Selaginella moellendorffii (Sm)

0

0

0

0

0

0

0

0

Gymnosperms

 

Picea abies (Pa)

0

0

0

0

0

0

0

0

Angiosperms

 Amborellaceae

Amborella trichopoda* (Ar)

3

0

0

0

2

1

0

0

Eudicots

 Actinidiaceae

Actinidia chinensis (Ah)

9

0

2

0

2

0

1

6

 Asteraceae

Helianthus annuus (Ha)

17

3

Not identified*

0

1

0

2

14

 

Lactuca sativa (Ls)

13

2

Not identified

0

1

0

2

10

 Brassicaceae

Arabidopsis thaliana (At)

6

1

2

0

0

0

4

2

 

Brassica oleracea (Bo)

8

1

4

0

0

0

5

3

 

Brassica rapa (Br)

9

0

8

0

0

0

5

4

 

Capsella rubella (Cb)

6

2

2

0

0

0

4

2

 Caricaceae

Carica papaya (Cp)

2

0

0

0

0

0

2

0

 Chenopodiaceae

Beta vulgaris (Bv)

4

0

1

0

2

0

1

1

 Cucurbitaceae

Citrullus lanatus (Cl)

3

0

1

0

0

0

3

0

 

Cucumis sativus (Cs)

3

0

1

0

0

0

3

0

 Euphorbiaceae

Ricinus communis (Rc)

4

0

1

0

1

0

3

0

 Leguminosae

Glycine max (Gm)

11

0

20

0

4

4

0

3

 

Medicago truncatula (Mt)

18

7

2

0

0

13

0

5

 

Phaseolus vulgaris (Pv)

5

0

6

0

1

2

0

2

 Malvaceae

Eucalyptus grandis (Eg)

15

9

3

0

0

13

0

2

 

Gossypium raimondii (Gr)

8

0

7

0

3

0

5

0

 

Theobroma cacao (Tc)

4

0

1

0

2

0

2

0

 Nelumbonaceae

Nelumbo nucifera (Nn)

4

Not identified

0

0

2

0

2

0

 Rosaceae

Malus domestica (Md)

4

0

Not identified

0

0

0

4

0

 

Prunus persica (Pp)

6

2

2

0

0

0

6

0

 

Pyrus bretschneideri (Pb)

11

Not identified

2

0

0

0

11

0

 Rutaceae

Citrus sinensis (Ci)

3

0

0

0

0

0

3

0

 Salicaceae

Populus trichocarpa (Pt)

5

0

0

0

1

0

4

0

 Solanaceae

Capsicum annuum (Cu)

8

1

0

0

1

3

0

4

 

Solanum lycopersicum (Sl)

7

1

1

0

1

3

0

3

 

Solanum tuberosum (St)

8

1

0

0

0

4

0

4

 Vitaceae

Vitis vinifera (Vv)

4

0

1

0

3

0

0

1

 Monocots

         

 Arecaceae

Elaeis guineensis (El)

7

0

3

6

1

0

0

0

 Musaceae

Musa acuminate (Ma)

8

0

8

4

4

0

0

0

 Orchidaceae

Phalaenopsis equestris (Pe)

5

Not identified

0

4

1

0

0

0

 Poaceae

Brachypodium distachyon (Bd)

16

3

0

16

0

0

0

0

 

Hordeum vulgare (Hv)

15

0

Not identified

15

0

0

0

0

 

Oryza sativa (Os)

10

0

3

9

1

0

0

0

 

Triticum aestivum (Ta)

13

0

Not identified

13

0

0

0

0

 

Zea mays (Zm)

10

0

3

9

1

0

0

0

  1. *: The gene mapping information is unclear, it is impossible to determine the tandem duplication pairs; or segmental duplication information cannot obtained from the PGDD website