Evolutionary directions of single nucleotide substitutions and structural mutations in the chloroplast genomes of the family Calycanthaceae

Table 3 Numbers, directions and locations of indels and repeats in the five chloroplast genomes of Calycanthaceae

		Subfamily	Genus	Species		Total
Mutation type				Calycanthus	Chimonanthus
Indel	Total	143	11	11	13	178
Size	1 ~ 10 bp	112	6	5	12	135
	11 ~ 50 bp	19	2	3	1	25
	50 ~ 100 bp	5	3	2	0	10
	>100 bp	7	0	1	0	8
Location	exon	8	1	1	0	10
	intron	23	1	2	1	27
	space	112	9	8	12	141
Direction	insertion	14	1	1	1	17
	deletion	113	10	10	12	145
	uncertain	16	0	0	0	16
Repeat	Total	89	17	7	3	116
Size	3 bp	4	0	0	0	4
	4 bp	25	3	0	0	28
	5 bp	40	9	2	1	52
	6 bp	15	2	2	2	21
	7 bp	1	0	1	0	2
	9 bp	3	0	0	0	3
	10 bp	1	1	0	0	3
	>10 bp	0	2	2	0	4
Location	exon	4	2	0	0	6
	intron	18	2	1	0	21
	space	67	13	6	3	89
Direction	insertion	75	15	6	3	99
	deletion	11	2	1	0	14
	uncertain	3	0	0	0	3

ISSN: 2730-7182