Fig. 7

Reconciled gene tree of vma11/vma3 (V-ATPase subunits c’ and c). Seven positions with the most consistent differentiation between vma11 and vma3 are shown; the most common residue in each fate is colored according to that fate. At the top, position numbers are shown (using yeast vma11 as a reference) and the different protein sections are displayed schematically (V: vacuolar, TM: trans-membrane, C: cytoplasmic). The two cytoplasmic sections are thought to provide the interaction interfaces with adjacent subunits. See Suppl. Figure S6 for the full gene tree