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Table 1 Comparison of Hsp90 nucleotide sequences (1145 bp) in 11 hypotrich populations

From: Assessing the utility of Hsp90 gene for inferring evolutionary relationships within the ciliate subclass Hypotricha (Protista, Ciliophora)

Populations No. of distinct sequences Total no. of variable sites (percentage of 1145 nucleotides) No. of variable sites at first positions (percentage of variable sites) No. of variable sites at second positions (percentage of variable sites) No. of variable sites at third positions (percentage of variable sites) Transversions (percentage of variable sites) Transitions C/T (percentage of variable sites) Transitions A/G (percentage of variable sites)
Ponturostylasp. 2 (2) 143 (12.5) 54 (37.8) 14 (9.8) 75 (52.4) 52 (36.4) 46 (32.2) 45 (31.4)
Ponturostyla enigmatica 6 (6) 216 (18.9) 71 (32.9) 38 (17.6) 107 (49.5) 159 (73.6) 26 (12.0) 31 (14.4)
Urosoma caudatap1 15 (15) 33 (2.9) 5 (15.1) 9 (40.9) 19 (57.6) 25 (75.8) 4 (12.1) 4 (12.1)
Urosoma caudatap2 5 (5) 22 (1.9) 7 (31.8) 6 (27.3) 9 (40.9) 16 (72.7) 2 (9.1) 4 (18.2)
Urosoma caudata(p1, p2) 20 (20) 103 (9.0) 11 (10.7) 45 (43.7) 47 (45.6) 81 (78.6) 14 (13.6) 8 (7.8)
Urosoma karinae 10 (10) 44 (3.8) 5 (11.4) 11 (25.0) 28 (63.6) 29 (65.9) 9 (20.5) 6 (13.6)
Pseudokeronopsis rubra 9 (9) 16 (1.4) 4 (25.0) 4 (25.0) 8 (50.0) 12 (75.0) 2 (12.5) 2 (12.5)
Pseudokeronopsis erythrina 8 (8) 153 (13.4) 57 (37.3) 13 (8.5) 83 (54.2) 125 (81.7) 15 (9.8) 13 (8.5)
Pseudoamphisiella quadrinucleata 7 (7) 26 (2.3) 11 (42.3) 3 (11.5) 12 (46.2) 18 (69.2) 3 (11.5) 5 (19.3)
Hemigastrostyla enigmatica 7 (7) 38 (3.3) 7 (18.4) 9 (23.7) 22 (57.9) 24 (63.2) 9 (23.7) 5 (13.1)
Hypotrichidium paraconicum 9 (7) 23 (2.0) 5 (21.7) 8 (34.8) 10 (43.5) 16 (69.6) 3 (13.0) 4 (17.4)
Neowallackiasp. 9 (9) 42 (3.7) 6 (14.3) 15 (35.7) 21 (50.0) 35 (83.3) 4 (9.5) 3 (7.2)
Total 87 (85) 543 (47.4) 208 (38.3) 107 (19.7) 228 (42.0) 440 (81.0) 56 (10.3) 47 (8.7)