TY - CHAP AU - Eernisse, D. J. AU - Reynolds, P. D. ED - Harrison, F. W. ED - Kohn, A. J. PY - 1994 DA - 1994// TI - Polyplacophora BT - Microscopic Anatomy of Invertebrates, Volume 5. Mollusca 1 PB - Wiley-Liss CY - New York ID - Eernisse1994 ER - TY - JOUR AU - Schwabe, E. PY - 2005 DA - 2005// TI - A catalogue of recent and fossil chitons (Mollusca: Polyplacophora) addenda JO - Novapex. VL - 6 ID - Schwabe2005 ER - TY - JOUR AU - Puchalski, S. S. AU - Eernisse, D. J. AU - Johnson, C. C. PY - 2008 DA - 2008// TI - The effect of sampling bias on the fossil record of chitons (Mollusca, Polyplacophora) JO - Am Malacol Bull. VL - 25 UR - https://doi.org/10.4003/0740-2783-25.1.87 DO - 10.4003/0740-2783-25.1.87 ID - Puchalski2008 ER - TY - JOUR AU - Kocot, K. M. AU - Cannon, J. T. AU - Todt, C. AU - Citarella, M. R. AU - Kohn, A. B. AU - Meyer, A. PY - 2011 DA - 2011// TI - Phylogenomics reveals deep molluscan relationships JO - Nature. VL - 477 UR - https://doi.org/10.1038/nature10382 DO - 10.1038/nature10382 ID - Kocot2011 ER - TY - JOUR AU - Smith, S. AU - Wilson, N. AU - Goetz, F. AU - Feehery, C. AU - Andrade, S. AU - Rouse, G. PY - 2011 DA - 2011// TI - Resolving the evolutionary relationships of molluscs with phylogenomic tools JO - Nature. VL - 480 UR - https://doi.org/10.1038/nature10526 DO - 10.1038/nature10526 ID - Smith2011 ER - TY - JOUR AU - Vinther, J. AU - Sperling, E. A. AU - Briggs, D. E. G. AU - Peterson, K. J. PY - 2012 DA - 2012// TI - A molecular palaeobiological hypothesis for the origin of aplacophoran molluscs and their derivation from chiton-like ancestors JO - Proc R Soc B. VL - 279 UR - https://doi.org/10.1098/rspb.2011.1773 DO - 10.1098/rspb.2011.1773 ID - Vinther2012 ER - TY - JOUR AU - Osca, D. AU - Irisarri, I. AU - Todt, C. AU - Grande, C. AU - Zardoya, R. PY - 2014 DA - 2014// TI - The complete mitochondrial genome of Scutopus ventrolineatus (Mollusca: Chaetodermomorpha) supports the Aculifera hypothesis JO - BMC Evol Biol. VL - 14 ID - Osca2014 ER - TY - JOUR AU - Sigwart, J. D. AU - Sutton, M. D. PY - 2007 DA - 2007// TI - Deep molluscan phylogeny: synthesis of palaeontological and neontological data JO - Proc R Soc B. VL - 274 UR - https://doi.org/10.1098/rspb.2007.0701 DO - 10.1098/rspb.2007.0701 ID - Sigwart2007 ER - TY - JOUR AU - Sutton, M. D. AU - Briggs, D. E. G. AU - Siveter, D. J. AU - Siveter, D. J. AU - Sigwart, J. D. PY - 2012 DA - 2012// TI - A Silurian armoured aplacophoran and implications for molluscan phylogeny JO - Nature. VL - 490 UR - https://doi.org/10.1038/nature11328 DO - 10.1038/nature11328 ID - Sutton2012 ER - TY - JOUR AU - Sutton, M. D. AU - Sigwart, J. D. PY - 2012 DA - 2012// TI - A chiton without a foot JO - Palaeontology. VL - 55 UR - https://doi.org/10.1111/j.1475-4983.2011.01126.x DO - 10.1111/j.1475-4983.2011.01126.x ID - Sutton2012 ER - TY - JOUR AU - Vinther, J. AU - Parry, L. AU - Briggs, D. E. G. AU - Roy, P. PY - 2017 DA - 2017// TI - Ancestral morphology of crown-group molluscs revealed by a new Ordovician stem aculiferan JO - Nature. VL - 542 UR - https://doi.org/10.1038/nature21055 DO - 10.1038/nature21055 ID - Vinther2017 ER - TY - JOUR AU - Scherholz, M. AU - Redl, E. AU - Wollesen, T. AU - Todt, C. AU - Wanninger, A. PY - 2015 DA - 2015// TI - From complex to simple: myogenesis in an aplacophoran mollusk reveals key traits in aculiferan evolution JO - BMC Evol Biol. VL - 15 UR - https://doi.org/10.1186/s12862-015-0467-1 DO - 10.1186/s12862-015-0467-1 ID - Scherholz2015 ER - TY - CHAP AU - Salvini-Plawen, L. AU - Steiner, G. ED - Taylor, J. D. PY - 1996 DA - 1996// TI - Synapomorphies and plesiomorphies in higher classification of the Mollusca BT - Origin and Evolutionary Radiation of the Mollusca. 1 PB - Oxford University Press CY - Oxford, New York ID - Salvini-Plawen1996 ER - TY - JOUR AU - Wingstrand, K. PY - 1985 DA - 1985// TI - On the anatomy and relationships of recent Monoplacophora JO - Galathea Rep. VL - 16 ID - Wingstrand1985 ER - TY - JOUR AU - Giribet, G. AU - Okusu, A. AU - Lindgren, A. R. AU - Huff, S. W. AU - Schrödl, M. AU - Nishiguchi, M. PY - 2006 DA - 2006// TI - Evidence for a clade composed of molluscs with serially repeated structures: monoplacophorans are related to chitons JO - Proc Natl Acad Sci U S A. VL - 103 UR - https://doi.org/10.1073/pnas.0602578103 DO - 10.1073/pnas.0602578103 ID - Giribet2006 ER - TY - STD TI - Stöger I, Sigwart JD, Kano Y, Knebelsberger T, Marshall BA, Schwabe E, et al. The continuing debate on deep molluscan phylogeny: evidence for Serialia (Mollusca, Monoplacophora + Polyplacophora). Biomed Res Int. 2013;407072. ID - ref16 ER - TY - JOUR AU - Wägele, J. W. AU - Letsch, H. AU - Klussmann-Kolb, A. AU - Mayer, C. AU - Misof, B. AU - Wagele, H. PY - 2009 DA - 2009// TI - Phylogenetic support values are not necessarily informative: the case of the Serialia hypothesis (a mollusk phylogeny) JO - Front Zool. VL - 6 UR - https://doi.org/10.1186/1742-9994-6-12 DO - 10.1186/1742-9994-6-12 ID - Wägele2009 ER - TY - JOUR AU - Vendrasco, M. J. AU - Runnegar, B. PY - 2004 DA - 2004// TI - Late Cambrian and Early Ordovician stem group chitons (Mollusca: Polyplacophora) from Utah and Missouri JO - J Paleontol. VL - 78 UR - https://doi.org/2.0.CO;2 DO - 2.0.CO;2 ID - Vendrasco2004 ER - TY - JOUR AU - Vendrasco, M. J. AU - Wood, T. E. AU - Runnegar, B. N. PY - 2004 DA - 2004// TI - Articulated Palaeozoic fossil with 17 plates greatly expands disparity of early chitons JO - Nature. VL - 429 UR - https://doi.org/10.1038/nature02548 DO - 10.1038/nature02548 ID - Vendrasco2004 ER - TY - JOUR AU - Sirenko, B. I. PY - 2013 DA - 2013// TI - Four new species and one new genus of Jurassic chitons (Mollusca: Polyplacophora: Lepidopleurida) from the middle Russian Sea JO - Proc Zool Inst RAS. VL - 317 ID - Sirenko2013 ER - TY - JOUR AU - Dell’Angelo, B. AU - Sosso, M. AU - Prudenza, M. AU - Bonfitto, A. PY - 2013 DA - 2013// TI - Notes on fossil chitons. 5. Polyplacophora from the Pliocene of Western Liguria, Northwest Italy JO - Riv Ital Paleontol Stratigr. VL - 119 ID - Dell’Angelo2013 ER - TY - BOOK AU - Fiedel, U. AU - Keupp, H. PY - 1988 DA - 1988// TI - Ischnochiton marloffsteinensis n. sp., eine Polyplacophore aus dem fränkischen Lias Paläont Z ID - Fiedel1988 ER - TY - JOUR AU - Sirenko, B. I. PY - 2006 DA - 2006// TI - New outlook on the system of chitons (Mollusca: Polyplacophora) JO - Venus. VL - 65 ID - Sirenko2006 ER - TY - JOUR AU - Okusu, A. AU - Schwabe, E. AU - Eernisse, D. J. AU - Giribet, G. PY - 2003 DA - 2003// TI - Towards a phylogeny of chitons (Mollusca, Polyplacophora) based on combined analysis of five molecular loci JO - Org Divers Evol. VL - 3 UR - https://doi.org/10.1078/1439-6092-00085 DO - 10.1078/1439-6092-00085 ID - Okusu2003 ER - TY - JOUR AU - Kelly, R. P. AU - Eernisse, D. J. PY - 2008 DA - 2008// TI - Reconstructing a radiation: the chiton genus Mopalia in the North Pacific JO - Invert Syst. VL - 22 UR - https://doi.org/10.1071/IS06021 DO - 10.1071/IS06021 ID - Kelly2008 ER - TY - JOUR AU - Irisarri, I. AU - Eernisse, D. J. AU - Zardoya, R. PY - 2014 DA - 2014// TI - Molecular phylogeny of Acanthochitonina (Mollusca: Polyplacophora: Chitonida): three new mitochondrial genomes, rearranged gene orders and systematics JO - J Nat Hist. VL - 48 UR - https://doi.org/10.1080/00222933.2014.963721 DO - 10.1080/00222933.2014.963721 ID - Irisarri2014 ER - TY - JOUR AU - Sigwart, J. D. AU - Stoeger, I. AU - Knebelsberger, T. AU - Schwabe, E. PY - 2013 DA - 2013// TI - Chiton phylogeny (Mollusca: Polyplacophora) and the placement of the enigmatic species Choriplax grayi (H. Adams & Angas) JO - Invert Syst. VL - 27 UR - https://doi.org/10.1071/IS13013 DO - 10.1071/IS13013 ID - Sigwart2013 ER - TY - JOUR AU - Sigwart, J. D. AU - Schwabe, E. AU - Saito, H. AU - Samadi, S. AU - Giribet, G. PY - 2011 DA - 2011// TI - Evolution in the deep sea: a combined analysis of the earliest diverging living chitons (Mollusca: Polyplacophora: Lepidopleurida) JO - Invert Syst. VL - 24 UR - https://doi.org/10.1071/IS10028 DO - 10.1071/IS10028 ID - Sigwart2011 ER - TY - JOUR AU - Vendrasco, M. J. AU - Fernandez, C. Z. AU - Eernisse, D. J. AU - Runnegar, B. PY - 2008 DA - 2008// TI - Aesthete canal morphology in the Mopaliidae (Polyplacophora) JO - Am Malacol Bull. VL - 25 UR - https://doi.org/10.4003/0740-2783-25.1.51 DO - 10.4003/0740-2783-25.1.51 ID - Vendrasco2008 ER - TY - JOUR AU - Buckland-Nicks, J. PY - 1995 DA - 1995// TI - Ultrastructure of sperm and sperm-egg interaction in Aculifera: implications for molluscan phylogeny JO - Mém Mus Nat Hist Nat Paris. VL - 166 ID - Buckland-Nicks1995 ER - TY - JOUR AU - Sigwart, J. AU - Sumner-Rooney, L. AU - Schwabe, E. AU - HeSZ, M. AU - Brennan, G. AU - Schrodl, M. PY - 2014 DA - 2014// TI - A new sensory organ in "primitive" molluscs (Polyplacophora: Lepidopleurida), and its context in the nervous system of chitons JO - Front Zool. VL - 11 UR - https://doi.org/10.1186/1742-9994-11-7 DO - 10.1186/1742-9994-11-7 ID - Sigwart2014 ER - TY - JOUR AU - Buckland-Nicks, J. PY - 2008 DA - 2008// TI - Fertilization biology and the evolution of chitons JO - Am Malacol Bull. VL - 25 UR - https://doi.org/10.4003/0740-2783-25.1.97 DO - 10.4003/0740-2783-25.1.97 ID - Buckland-Nicks2008 ER - TY - BOOK AU - Eernisse, D. J. PY - 1984 DA - 1984// TI - Lepidochitona Gray, 1821 (Mollusca: Polyplacophora), from the pacific coast of the United States: systematics and reproduction PB - University of California CY - Santa Cruz ID - Eernisse1984 ER - TY - JOUR AU - Sirenko, B. I. PY - 1993 DA - 1993// TI - Revision of the system of the order Chitonida (Mollusca: Polyplacophora) on the basis of correlation between the type of gills arrangement and the shape of the chorion processes JO - Ruthenica. VL - 3 ID - Sirenko1993 ER - TY - JOUR AU - Schwabe, E. PY - 2010 DA - 2010// TI - Illustrated symmary of chiton terminology (Mollusca, Polyplacophora) JO - Spixiana. VL - 33 ID - Schwabe2010 ER - TY - STD TI - MolluscaBase. Chitonoidea Rafinesque, 1815. Accessed through: World Register of Marine Species at: http://www.marinespecies.org/aphia.php?p=taxdetails&id=385404 on 2019-03-19 [Internet]. 2020. UR - http://www.marinespecies.org/aphia.php?p=taxdetails&id=385404 ID - ref36 ER - TY - JOUR AU - Bernt, M. AU - Bleidorn, C. AU - Braband, A. AU - Dambach, J. AU - Donath, A. AU - Fritzsch, G. PY - 2013 DA - 2013// TI - A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny JO - Mol Phylogenet Evol. VL - 69 UR - https://doi.org/10.1016/j.ympev.2013.05.002 DO - 10.1016/j.ympev.2013.05.002 ID - Bernt2013 ER - TY - JOUR AU - Tsaousis, A. D. AU - Martin, D. P. AU - Ladoukakis, E. D. AU - Posada, D. AU - Zouros, E. PY - 2005 DA - 2005// TI - Widespread recombination in published animal mtDNA sequences JO - Mol Biol Evol. VL - 22 UR - https://doi.org/10.1093/molbev/msi084 DO - 10.1093/molbev/msi084 ID - Tsaousis2005 ER - TY - JOUR AU - Boore, J. L. PY - 1999 DA - 1999// TI - Animal mitochondrial genomes JO - Nuc Acids Res. VL - 27 UR - https://doi.org/10.1093/nar/27.8.1767 DO - 10.1093/nar/27.8.1767 ID - Boore1999 ER - TY - JOUR AU - Boore, J. L. AU - Brown, W. M. PY - 1998 DA - 1998// TI - Big trees from little genomes: mitochondrial gene order as a phylogenetic tool JO - Curr Opin Genet Dev. VL - 8 UR - https://doi.org/10.1016/S0959-437X(98)80035-X DO - 10.1016/S0959-437X(98)80035-X ID - Boore1998 ER - TY - JOUR AU - Brown, W. M. AU - George, M. J. AU - Wilson, A. C. PY - 1979 DA - 1979// TI - Rapid evolution of animal mitochondrial DNA JO - Proc Natl Acad Sci U S A. VL - 76 UR - https://doi.org/10.1073/pnas.76.4.1967 DO - 10.1073/pnas.76.4.1967 ID - Brown1979 ER - TY - JOUR AU - Irisarri, I. AU - San Mauro, D. AU - Abascal, F. AU - Ohler, A. AU - Vences, M. AU - Zardoya, R. PY - 2012 DA - 2012// TI - The origin of modern frogs (Neobatrachia) was accompanied by acceleration in mitochondrial and nuclear substitution rates JO - BMC Genomics. VL - 13 UR - https://doi.org/10.1186/1471-2164-13-626 DO - 10.1186/1471-2164-13-626 ID - Irisarri2012 ER - TY - JOUR AU - Irisarri, I. AU - Baurain, D. AU - Brinkmann, H. AU - Delsuc, F. AU - Sire, J. -. Y. AU - Kupfer, A. PY - 2017 DA - 2017// TI - Phylotranscriptomic consolidation of the jawed vertebrate timetree JO - Nat Ecol Evol. VL - 1 UR - https://doi.org/10.1038/s41559-017-0240-5 DO - 10.1038/s41559-017-0240-5 ID - Irisarri2017 ER - TY - JOUR AU - Xu, W. AU - Jameson, D. AU - Tang, B. AU - Higgs, P. PY - 2006 DA - 2006// TI - The relationship between the rate of molecular evolution and the rate of genome rearrangement in animal mitochondrial genomes JO - J Mol Evol. VL - 63 UR - https://doi.org/10.1007/s00239-005-0246-5 DO - 10.1007/s00239-005-0246-5 ID - Xu2006 ER - TY - JOUR AU - Mikkelsen, N. T. AU - Kocot, K. M. AU - Halanych, K. M. PY - 2018 DA - 2018// TI - Mitogenomics reveals phylogenetic relationships of caudofoveate aplacophoran molluscs JO - Mol Phylogenet Evol. VL - 127 UR - https://doi.org/10.1016/j.ympev.2018.04.031 DO - 10.1016/j.ympev.2018.04.031 ID - Mikkelsen2018 ER - TY - JOUR AU - Uribe, J. E. AU - Irisarri, I. AU - Templado, J. AU - Zardoya, R. PY - 2019 DA - 2019// TI - New patellogastropod mitogenomes help counteracting long-branch attraction in the deep phylogeny of gastropod mollusks JO - Mol Phylogenet Evol. VL - 133 UR - https://doi.org/10.1016/j.ympev.2018.12.019 DO - 10.1016/j.ympev.2018.12.019 ID - Uribe2019 ER - TY - JOUR AU - Guerra, D. AU - Bouvet, K. AU - Breton, S. PY - 2018 DA - 2018// TI - Mitochondrial gene order evolution in Mollusca: inference of the ancestral state from the mtDNA of Chaetopleura apiculata (Polyplacophora, Chaetopleuridae) JO - Mol Phylogenet Evol. VL - 120 UR - https://doi.org/10.1016/j.ympev.2017.12.013 DO - 10.1016/j.ympev.2017.12.013 ID - Guerra2018 ER - TY - STD TI - Veale AJ, Williams L, Tsai P, Thakur V, Lavery S. The complete mitochondrial genomes of two chiton species (Sypharochiton pelliserpentis and Sypharochiton sinclairi) obtained using Illumina next generation sequencing. Mitochondr DNA. 2014:1–2. ID - ref48 ER - TY - BOOK AU - Sambrook, J. AU - Fritsch, E. F. AU - Maniatis, T. PY - 1989 DA - 1989// TI - Molecular cloning: a laboratory manual PB - Cold Spring Harbor Laboratory Press CY - Cold Spring Harbor, New York ID - Sambrook1989 ER - TY - JOUR AU - Kornobis, E. AU - Cabellos, L. AU - Aguilar, F. AU - Frías-López, C. AU - Rozas, J. AU - Marco, J. PY - 2015 DA - 2015// TI - TRUFA: a user-friendly web server for de novo RNA-seq analysis using cluster computing JO - Evol Bioinform VL - 11 UR - https://doi.org/10.4137/EBO.S23873 DO - 10.4137/EBO.S23873 ID - Kornobis2015 ER - TY - BOOK AU - Andrews, S. PY - 2020 DA - 2020// TI - FastQC. High Throughput Sequence QC Report ID - Andrews2020 ER - TY - JOUR AU - Schmieder, R. AU - Edwards, R. PY - 2011 DA - 2011// TI - Quality control and preprocessing of metagenomic datasets JO - Bioinform. VL - 27 UR - https://doi.org/10.1093/bioinformatics/btr026 DO - 10.1093/bioinformatics/btr026 ID - Schmieder2011 ER - TY - JOUR AU - Grabherr, M. G. AU - Haas, B. J. AU - Yassour, M. AU - Levin, J. Z. AU - Thompson, D. A. AU - Amit, I. PY - 2011 DA - 2011// TI - Full-length transcriptome assembly from RNA-Seq data without a reference genome JO - Nat Biotechnol. VL - 29 UR - https://doi.org/10.1038/nbt.1883 DO - 10.1038/nbt.1883 ID - Grabherr2011 ER - TY - JOUR AU - Boore, J. L. AU - Macey, J. R. AU - Medina, M. PY - 2005 DA - 2005// TI - Sequencing and comparing whole mitochondrial genomes of animals JO - Methods Enzymol. VL - 395 UR - https://doi.org/10.1016/S0076-6879(05)95019-2 DO - 10.1016/S0076-6879(05)95019-2 ID - Boore2005 ER - TY - JOUR AU - Guo, X. AU - Cui, Y. AU - Wang, S. AU - Xu, Y. AU - Sun, X. AU - Li, R. PY - 2019 DA - 2019// TI - The complete mitochondrial genome and phylogenetic analysis of Acanthochitona rubrolineatus (Lischke, 1873) JO - Mitochondr DNA Part B. VL - 4 UR - https://doi.org/10.1080/23802359.2019.1642159 DO - 10.1080/23802359.2019.1642159 ID - Guo2019 ER - TY - JOUR AU - Cui, Y. AU - Guo, X. AU - Wang, S. AU - Xu, Y. AU - Sun, X. AU - Li, R. PY - 2019 DA - 2019// TI - The complete mitochondrial genome and phylogenetic analysis of Ischnochiton hakodadensis (Carpenter, 1893) JO - Mitochondr DNA Part B. VL - 4 UR - https://doi.org/10.1080/23802359.2019.1642164 DO - 10.1080/23802359.2019.1642164 ID - Cui2019 ER - TY - JOUR AU - Oliveira, A. L. AU - Wollesen, T. AU - Kristof, A. AU - Scherholz, M. AU - Redl, E. AU - Todt, C. PY - 2016 DA - 2016// TI - Comparative transcriptomics enlarges the toolkit of known developmental genes in mollusks JO - BMC Genomics. VL - 17 UR - https://doi.org/10.1186/s12864-016-3080-9 DO - 10.1186/s12864-016-3080-9 ID - Oliveira2016 ER - TY - JOUR AU - Halanych, K. M. AU - Kocot, K. M. PY - 2014 DA - 2014// TI - Repurposed transcriptomic data facilitate discovery of innate immunity toll-like receptor (TLR) genes across Lophotrochozoa JO - Biol Bull. VL - 227 UR - https://doi.org/10.1086/BBLv227n2p201 DO - 10.1086/BBLv227n2p201 ID - Halanych2014 ER - TY - JOUR AU - Riesgo, A. AU - Andrade, S. AU - Sharma, P. AU - Novo, M. AU - Perez-Porro, A. AU - Vahtera, V. PY - 2012 DA - 2012// TI - Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa JO - Front Zool. VL - 9 UR - https://doi.org/10.1186/1742-9994-9-33 DO - 10.1186/1742-9994-9-33 ID - Riesgo2012 ER - TY - JOUR AU - Kocot, K. M. AU - Todt, C. AU - Mikkelsen, N. T. AU - Halanych, K. M. PY - 2019 DA - 2019// TI - Phylogenomics of Aplacophora (Mollusca, Aculifera) and a solenogaster without a foot JO - Proc R Soc B. VL - 286 UR - https://doi.org/10.1098/rspb.2019.0115 DO - 10.1098/rspb.2019.0115 ID - Kocot2019 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol. VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Boore, J. L. AU - Brown, W. M. PY - 1994 DA - 1994// TI - Complete DNA sequence of the mitochondrial genome of the black chiton, Kathrina tunicata JO - Genet VL - 138 ID - Boore1994 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nuc Acids Res. VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Gouy, M. AU - Guindon, S. AU - Gascuel, O. PY - 2010 DA - 2010// TI - SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building JO - Mol Biol Evol. VL - 27 UR - https://doi.org/10.1093/molbev/msp259 DO - 10.1093/molbev/msp259 ID - Gouy2010 ER - TY - JOUR AU - Criscuolo, A. AU - Gribaldo, S. PY - 2010 DA - 2010// TI - BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments JO - BMC Evol Biol. VL - 10 UR - https://doi.org/10.1186/1471-2148-10-210 DO - 10.1186/1471-2148-10-210 ID - Criscuolo2010 ER - TY - JOUR AU - Nguyen, L. -. T. AU - Schmidt, H. A. AU - Haeseler, A. AU - Minh, B. Q. PY - 2015 DA - 2015// TI - IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies JO - Mol Biol Evol VL - 32 UR - https://doi.org/10.1093/molbev/msu300 DO - 10.1093/molbev/msu300 ID - Nguyen2015 ER - TY - JOUR AU - Ababneh, F. AU - Jermiin, L. S. AU - Ma, C. AU - Robinson, J. PY - 2006 DA - 2006// TI - Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences JO - Bioinform. VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl064 DO - 10.1093/bioinformatics/btl064 ID - Ababneh2006 ER - TY - JOUR AU - Le, S. Q. AU - Gascuel, O. AU - Lartillot, N. PY - 2008 DA - 2008// TI - Empirical profile mixture models for phylogenetic reconstruction JO - Bioinform. VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn445 DO - 10.1093/bioinformatics/btn445 ID - Le2008 ER - TY - JOUR AU - Lartillot, N. AU - Rodrigue, N. AU - Stubbs, D. AU - Richer, J. AU - PhyloBayes, M. P. I. PY - 2013 DA - 2013// TI - Phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment JO - Syst Biol. VL - 62 UR - https://doi.org/10.1093/sysbio/syt022 DO - 10.1093/sysbio/syt022 ID - Lartillot2013 ER - TY - BOOK AU - Rambaut, A. AU - Drummond, A. J. PY - 2020 DA - 2020// TI - Tracer v. 1.5 ID - Rambaut2020 ER - TY - JOUR AU - Ronquist, F. AU - Teslenko, M. AU - Mark, P. AU - Ayres, D. L. AU - Darling, A. AU - Höhna, S. PY - 2012 DA - 2012// TI - MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space JO - Syst Biol. VL - 61 UR - https://doi.org/10.1093/sysbio/sys029 DO - 10.1093/sysbio/sys029 ID - Ronquist2012 ER - TY - JOUR AU - Pojeta, J. J. AU - Eernisse, D. J. AU - Hoare, R. D. AU - Henderson, M. D. PY - 2003 DA - 2003// TI - Echinochiton dufoei: a new spiny Ordovician chiton JO - J Paleontol. VL - 77 UR - https://doi.org/10.1017/S0022336000044395 DO - 10.1017/S0022336000044395 ID - Pojeta2003 ER - TY - JOUR AU - Sutton, M. D. AU - Briggs, D. E. G. AU - Siveter, D. J. AU - Siveter, D. J. PY - 2001 DA - 2001// TI - An exceptionally preserved vermiform mollusc from the Silurian of England JO - Nature. VL - 410 UR - https://doi.org/10.1038/35068549 DO - 10.1038/35068549 ID - Sutton2001 ER - TY - JOUR AU - Benton, M. J. AU - Donoghue, P. C. J. AU - Asher, R. J. AU - Friedman, M. AU - Near, T. J. AU - Vinther, J. PY - 2015 DA - 2015// TI - Constraints on the timescale of animal evolutionary history JO - Palaeontol Electron VL - 18.1.1FC ID - Benton2015 ER - TY - JOUR AU - Laghi, G. F. PY - 2005 DA - 2005// TI - Upper Triassic chitons from the Italian Dolomites JO - Lav Soc Venez Sci Nat. VL - 30 ID - Laghi2005 ER - TY - JOUR AU - Fucini, A. PY - 1912 DA - 1912// TI - Polyplacophora del Lias inferiore della Montagna di Casale in Sicilia JO - Palaeontogr Ital. VL - 18 ID - Fucini1912 ER - TY - JOUR AU - Vendrasco, M. J. AU - Eernisse, D. J. AU - Powell, C. L. AU - Fernandez, C. Z. PY - 2012 DA - 2012// TI - Polyplacophora (Mollusca) from the San Diego formation: a remarkable assemblage of fossil chitons from the Pliocene of southern California JO - Nat Hist Mus Los Ang County Contrib Sci. VL - 520 ID - Vendrasco2012 ER - TY - STD TI - Itoigawa J, Nishimoto H. Miocene Polyplacophora assemblage from the Mizunami group, Central Japan (first report). Bull Mizunami Fossil Mus. 1975;2. ID - ref78 ER - TY - BOOK AU - Smith, A. G. AU - Sohl, N. F. AU - Yochelson, E. L. PY - 1968 DA - 1968// TI - New upper cretaceous Amphineura (Mollusca) description of chitons from the Gulf coastal plain and Puerto Rico. U.S PB - Geological Survey CY - Washington ID - Smith1968 ER - TY - JOUR AU - Yang, Z. PY - 2007 DA - 2007// TI - PAML 4: phylogenetic analysis by maximum likelihood JO - Mol Biol Evol. VL - 24 UR - https://doi.org/10.1093/molbev/msm088 DO - 10.1093/molbev/msm088 ID - Yang2007 ER - TY - JOUR AU - Reis, M. AU - Thawornwattana, Y. AU - Angelis, K. AU - Telford Maximilian, J. AU - Donoghue Philip, C. J. AU - Yang, Z. PY - 2015 DA - 2015// TI - Uncertainty in the timing of origin of animals and the limits of precision in molecular timescales JO - Curr Biol. VL - 25 UR - https://doi.org/10.1016/j.cub.2015.09.066 DO - 10.1016/j.cub.2015.09.066 ID - Reis2015 ER - TY - JOUR AU - Thorne, J. L. AU - Kishino, H. AU - Painter, I. S. PY - 1998 DA - 1998// TI - Estimating the rate of evolution of the rate of molecular evolution JO - Mol Biol Evol. VL - 15 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025892 DO - 10.1093/oxfordjournals.molbev.a025892 ID - Thorne1998 ER - TY - JOUR AU - Yang, Z. PY - 1994 DA - 1994// TI - Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods JO - J Mol Evol. VL - 39 UR - https://doi.org/10.1007/BF00160154 DO - 10.1007/BF00160154 ID - Yang1994 ER - TY - JOUR AU - Macey, J. R. AU - Larson, A. AU - Ananjeva, N. B. AU - Papenfuss, T. J. PY - 1997 DA - 1997// TI - Replication slippage may cause parallel evolution in the secondary structures of mitochondrial transfer RNAs JO - Mol Biol Evol. VL - 14 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025699 DO - 10.1093/oxfordjournals.molbev.a025699 ID - Macey1997 ER - TY - CHAP AU - Boore, J. L. ED - Sankoff, D. ED - Nadeau, J. H. PY - 2000 DA - 2000// TI - The duplication/ random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals BT - Comparative Genomics PB - Kluwer Academic Publisher CY - Dordrecht UR - https://doi.org/10.1007/978-94-011-4309-7_13 DO - 10.1007/978-94-011-4309-7_13 ID - Boore2000 ER - TY - JOUR AU - San Mauro, D. AU - Gower, D. J. AU - Zardoya, R. AU - Wilkinson, M. PY - 2006 DA - 2006// TI - A hotspot of gene order rearrangement by tandem duplication and random loss in the vertebrate mitochondrial genome JO - Mol Biol Evol. VL - 23 UR - https://doi.org/10.1093/molbev/msj025 DO - 10.1093/molbev/msj025 ID - San Mauro2006 ER - TY - JOUR AU - Medina, M. AU - Lal, S. AU - VallËs, Y. AU - Takaoka, T. L. AU - Dayrat, B. A. AU - Boore, J. L. PY - 2011 DA - 2011// TI - Crawling through time: transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics JO - Mar Genomics. VL - 4 UR - https://doi.org/10.1016/j.margen.2010.12.006 DO - 10.1016/j.margen.2010.12.006 ID - Medina2011 ER - TY - JOUR AU - Grande, C. AU - Templado, J. AU - Cervera, J. L. AU - Zardoya, R. PY - 2002 DA - 2002// TI - The complete mitochondrial genome of the nudibranch Roboastra europaea (Mollusca: Gastropoda) supports the monophyly of opistobranchs JO - Mol Biol Evol. VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003990 DO - 10.1093/oxfordjournals.molbev.a003990 ID - Grande2002 ER - TY - JOUR AU - Irisarri, I. AU - San Mauro, D. AU - Green, D. M. AU - Zardoya, R. PY - 2010 DA - 2010// TI - The complete mitochondrial genome of the relict frog Leiopelma archeyi: insights into the root of the frog tree of life JO - Mitochondr DNA. VL - 21 UR - https://doi.org/10.3109/19401736.2010.513973 DO - 10.3109/19401736.2010.513973 ID - Irisarri2010 ER - TY - JOUR AU - Dowton, M. AU - Campbell, N. J. H. PY - 2001 DA - 2001// TI - Intramitochondrial recombination – is it why some mitochondrial genes sleep around? JO - Trends Ecol Evol. VL - 16 UR - https://doi.org/10.1016/S0169-5347(01)02182-6 DO - 10.1016/S0169-5347(01)02182-6 ID - Dowton2001 ER - TY - JOUR AU - Irisarri, I. AU - Meyer, A. PY - 2016 DA - 2016// TI - The identification of the closest living relative(s) of tetrapods: phylogenomic lessons for resolving short ancient internodes JO - Syst Biol. VL - 65 UR - https://doi.org/10.1093/sysbio/syw057 DO - 10.1093/sysbio/syw057 ID - Irisarri2016 ER - TY - JOUR AU - Sirenko, B. I. PY - 1997 DA - 1997// TI - The importance of the development of articulamentum for taxonomy of chitons (Mollusca, Polyplacophora) JO - Ruthenica. VL - 7 ID - Sirenko1997 ER - TY - JOUR AU - Wilson, N. G. AU - Rouse, G. W. AU - Giribet, G. PY - 2010 DA - 2010// TI - Assessing the molluscan hypothesis Serialia (Monoplacophora + Polyplacophora) using novel molecular data JO - Mol Phylogenet Evol. VL - 54 UR - https://doi.org/10.1016/j.ympev.2009.07.028 DO - 10.1016/j.ympev.2009.07.028 ID - Wilson2010 ER - TY - JOUR AU - Buckland-Nicks, J. AU - Hodgson, A. N. PY - 2000 DA - 2000// TI - Fertilization in Callochiton castaneus (Mollusca) JO - Biol Bull. VL - 199 UR - https://doi.org/10.2307/1542707 DO - 10.2307/1542707 ID - Buckland-Nicks2000 ER - TY - JOUR AU - Breton, S. AU - Beaupré, H. D. AU - Stewart, D. T. AU - Hoeh, W. R. AU - Blier, P. U. PY - 2007 DA - 2007// TI - The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough? JO - Trends Genet. VL - 23 UR - https://doi.org/10.1016/j.tig.2007.05.011 DO - 10.1016/j.tig.2007.05.011 ID - Breton2007 ER - TY - JOUR AU - Sigwart, J. D. PY - 2008 DA - 2008// TI - Gross anatomy and positional homology of gills, gonopores, and nephridiopores in “basal” living chitons (Polyplacophora: Lepidopleurina) JO - Am Malacol Bull. VL - 25 UR - https://doi.org/10.4003/0740-2783-25.1.43 DO - 10.4003/0740-2783-25.1.43 ID - Sigwart2008 ER - TY - JOUR AU - Risbec, J. PY - 1964 DA - 1964// TI - Études anatomiques sur les amphineures de la Nouvelle-Calédonie JO - J Soc Oceanistes. VL - 2 UR - https://doi.org/10.3406/jso.1946.1525 DO - 10.3406/jso.1946.1525 ID - Risbec1964 ER - TY - JOUR AU - Sirenko, B. I. PY - 2018 DA - 2018// TI - Taiwanese deep-water chitons (Mollusca: Polyplacophora) and survey of chiton fauna of Taiwan JO - Zootaxa. VL - 4422 UR - https://doi.org/10.11646/zootaxa.4422.3.1 DO - 10.11646/zootaxa.4422.3.1 ID - Sirenko2018 ER - TY - BOOK AU - Kaas, P. AU - Belle, R. A. PY - 1985 DA - 1985// TI - Monograph of living chitons. Volume 1. Order Neoloricata: Lepidopleurina. Brill, E. J: Leiden ID - Kaas1985 ER - TY - JOUR AU - Belle, R. A. PY - 1983 DA - 1983// TI - The systematic classification of the chitons (Mollusca: Polyplacophora) JO - Inf Soc Belge Malacol. VL - 13 ID - Belle1983 ER - TY - STD TI - Kaas P, Van Belle RA. Monograph of living chitons. Volume 3. Suborder Ischnochitonina. Ischnochitonidae: Chaetopleurinae and Ischnochitoninae (pars). Additions to Vols. 1 and 2. Brill, E. J: Leiden; 1987. p. 302. ID - ref101 ER - TY - STD TI - Kaas P, Van Belle RA. Monograph of living chitons. Volume 5. Suborder Ischnochitonina: Ischnochitonidae: Ischnochitonina (concluded). Callistoplacidae; Mopaliidae. Additions to Vols. 1–4. Brill, E. J: Leiden; 1994. p. 402. ID - ref102 ER - TY - STD TI - Kaas P, Van Belle RA. Monograph of living chitons. Volume 2. Suborder Ischnochitonina. Ischnochitonidae: Schizoplacinae, Callochitoninae and Lepidochitoninae. Brill, E. J: Leiden; 1985. p. 198. ID - ref103 ER - TY - JOUR AU - Schwabe, E. PY - 2008 DA - 2008// TI - A summary of reports of abyssal and hadal Monoplacophora and Polyplacophora (Mollusca) JO - Zootaxa. VL - 1866 UR - https://doi.org/10.11646/zootaxa.1866.1.10 DO - 10.11646/zootaxa.1866.1.10 ID - Schwabe2008 ER - TY - JOUR AU - Pojeta, J. J. AU - Vendrasco, M. J. AU - Darrough, G. PY - 2010 DA - 2010// TI - Upper Cambrian chitons (Mollusca, polyplacophora) from Missouri JO - USA Bull Am Paleontol. VL - 379 ID - Pojeta2010 ER - TY - JOUR AU - Scherholz, M. AU - Redl, E. AU - Wollesen, T. AU - Todt, C. AU - Wanninger, A. PY - 2013 DA - 2013// TI - Aplacophoran mollusks evolved from ancestors with polyplacophoran-like features JO - Curr Biol. VL - 23 UR - https://doi.org/10.1016/j.cub.2013.08.056 DO - 10.1016/j.cub.2013.08.056 ID - Scherholz2013 ER - TY - JOUR AU - Puchalski, S. S. AU - Johnson, C. C. AU - Kauffman, E. G. AU - Eernisse, D. J. PY - 2009 DA - 2009// TI - A new genus and two new species of multiplacophorans (Mollusca, Polyplacophora, Neoloricata), Mississippian (Chesterian) JO - Indiana J Paleontol. VL - 83 UR - https://doi.org/10.1666/08-108.1 DO - 10.1666/08-108.1 ID - Puchalski2009 ER - TY - JOUR AU - Parham, J. F. AU - Donoghue, P. C. J. AU - Bell, C. J. AU - Calway, T. D. AU - Head, J. J. AU - Holroyd, P. A. PY - 2012 DA - 2012// TI - Best practices for justifying fossil calibrations JO - Syst Biol. VL - 61 UR - https://doi.org/10.1093/sysbio/syr107 DO - 10.1093/sysbio/syr107 ID - Parham2012 ER -