Fig. 1
From: The ability of single genes vs full genomes to resolve time and space in outbreak analysis
Phylogenies of West African Ebola virus genomes (top) or GP sequences (bottom). Temporal phylogenies recovered using BEAST are shown on the left and maximum likelihood phylogenies recovered with RAxML are on the right. Tips are coloured based on country (Sierra Leone in blue, Liberia in red, Guinea in green) and location (lighter colours indicate administrative divisions lying towards west of the country). Tips outlined in white indicate the 60 chosen for date and location masking, ticks to the right of phylogenies indicate the y positions of masked tips coloured by their true location. In temporal phylogenies branches are also coloured based on GLM-inferred ancestral locations. Nodes in temporal phylogenies with <0.10 posterior probability are indicated with grey X marks. Maximum likelihood phylogenies on the right are rooted via temporal regression in TreeTime