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Table 3 lnL values and parameters estimates under CODEML different branch models

From: Analysis of substitution rates showed that TLR5 is evolving at different rates among mammalian groups

Model ω0 ωL ωR ωCH ωCA ωP ωE p lnL
M0 0.3375 = ω0 = ω0 = ω0 = ω0 = ω0 = ω0 144 −46,458.51
M2 0.4084 0.3063 = ωL = ωL = ωL = ω0 = ω0 145 −46,439.89
M5 0.4087 0.2503 0.3321 0.3184 0.2677 = ω0 = ω0 148 −46,432.80
M7 0.3759 0.2505 0.3322 0.3184 0.2678 0.4322 0.4057 150 −46,431.47
  1. p, number of parameters in the model; ωL, ωR, ωCH, ωCA, ωP, ωE, ω0 are the dN/dS ratios for branches Lagomorpha, Rodentia, Chiroptera, Carnivora, Primata, Euungulata and all other branches, respectively (see Fig. 1)