BMC Ecology and Evolution

Table 3 lnL values and parameters estimates under CODEML different branch models

From: Analysis of substitution rates showed that TLR5 is evolving at different rates among mammalian groups

Model	ω₀	ω_L	ω_R	ω_CH	ω_CA	ω_P	ω_E	p	lnL
M0	0.3375	= ω₀	= ω₀	= ω₀	= ω₀	= ω₀	= ω₀	144	−46,458.51
M2	0.4084	0.3063	= ω_L	= ω_L	= ω_L	= ω₀	= ω₀	145	−46,439.89
M5	0.4087	0.2503	0.3321	0.3184	0.2677	= ω₀	= ω₀	148	−46,432.80
M7	0.3759	0.2505	0.3322	0.3184	0.2678	0.4322	0.4057	150	−46,431.47

p, number of parameters in the model; ω_L, ω_R, ω_CH, ω_CA, ω_P, ω_E, ω₀ are the d_N/d_S ratios for branches Lagomorpha, Rodentia, Chiroptera, Carnivora, Primata, Euungulata and all other branches, respectively (see Fig. 1)

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