Table 1 Prior Schemes (PS) used in pairwise BPP analyses. Prior distributions on τ represent two relative divergence depths (deep and shallow) and on θ represent two relative mutation rate scaled effective population sizes (large and small)
Prior Scheme (PS) | Effective pop. size | Divergence depth | Gamma distribution for prior |
|---|---|---|---|
1 | Large | Deep | θ = Γ [1, 10] and τ = Γ [1, 10] |
2 | Large | Shallow | θ = Γ [1, 10] and τ = Γ [2, 2000] |
3 | Small | Shallow | θ = Γ [2, 2000] and τ = Γ [2, 2000] |
4 | Small | Deep | θ = Γ [2, 2000] and τ = Γ [1, 10] |