From: Serotype-specific evolutionary patterns of antimicrobial-resistant Salmonella enterica
Gene | Ln L MA1a | Ln L MAb | p valuec | FDRd | Functione | ωf | proportion of sites under pos. Selection(%)g |
---|---|---|---|---|---|---|---|
S. Dublin branch | |||||||
Cluster_1190 | − 7073.691 | − 7048.222 | 0.000 | 0.000 | autotransporter outer membrane beta-barrel domain-containing protein | 569.327 | 5.984 |
Cluster_1721 | − 1052.362 | − 1038.860 | 0.000 | 0.000 | dipeptidase E | 999.000 | 1.364 |
Cluster_1900 | −2015.241 | −2004.734 | 0.000 | 0.002 | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase | 999.000 | 0.526 |
Cluster_2035 | − 2457.111 | − 2446.938 | 0.000 | 0.002 | flagellar M-ring protein FliF | 999.000 | 0.482 |
Cluster_3324 | −778.864 | − 771.694 | 0.000 | 0.032 | fimbrial protein StiA | 999.000 | 0.804 |
S. Newport branch | |||||||
Cluster_831 | − 1041.959 | − 1024.731 | 0.000 | 0.000 | ABC transporter ATP-binding protein | 999.000 | 3.724 |
Cluster_875 | −844.370 | − 826.859 | 0.000 | 0.000 | CaiF/GrlA family transcriptional regulator | 999.000 | 4.986 |
Cluster_1190 | − 7071.499 | − 7051.968 | 0.000 | 0.000 | autotransporter outer membrane beta-barrel domain-containing protein | 999.000 | 6.661 |
Cluster_1461 | − 4112.903 | − 4103.963 | 0.000 | 0.003 | 2-oxoglutarate dehydrogenase E1 component | 999.000 | 0.113 |
Cluster_1538 | − 2076.594 | − 2066.164 | 0.000 | 0.001 | invasin | 999.000 | 0.295 |
Cluster_1678 | −2008.961 | −2001.754 | 0.000 | 0.019 | hypothetical protein | 204.362 | 0.829 |
Cluster_3346 | − 1744.612 | − 1726.105 | 0.000 | 0.000 | hypothetical protein | 999.000 | 11.655 |
Cluster_3368 | − 4010.845 | − 3976.156 | 0.000 | 0.000 | outer membrane protein assembly factor BamA | 836.419 | 3.378 |
S. Typhimurium branch | |||||||
Cluster_476 | −1969.539 | − 1933.139 | 0.000 | 0.000 | porin | 859.863 | 7.172 |
Cluster_1190 | − 7076.553 | −7037.396 | 0.000 | 0.000 | autotransporter outer membrane beta-barrel domain-containing protein | 252.954 | 7.072 |
Cluster_1216 | − 2790.059 | − 2781.805 | 0.000 | 0.008 | maltodextrin glucosidase | 999.000 | 0.764 |
Cluster_1756 | − 2830.518 | − 2823.397 | 0.000 | 0.024 | glutamine--fructose-6-phosphate aminotransferase | 828.247 | 0.394 |
Cluster_2234 | −1998.702 | −1990.410 | 0.000 | 0.008 | tryptophan permease | 999.000 | 1.035 |
Cluster_2311 | − 3370.510 | − 3358.161 | 0.000 | 0.000 | E3 ubiquitin--protein ligase | 171.701 | 1.404 |
Cluster_2757 | − 2077.394 | − 2068.717 | 0.000 | 0.008 | D-serine/D-alanine/glycine transporter | 106.317 | 1.691 |