From: Serotype-specific evolutionary patterns of antimicrobial-resistant Salmonella enterica
Gene | No. of taxaa | Functionb | Serotype-associatedc | PHI p value | RDPd | GENECONVd | Bootscand | Maxchid | Chimaerad | SiSscand | 3Seqd |
---|---|---|---|---|---|---|---|---|---|---|---|
Cluster_25 | 90 | oxidoreductase FeS-binding subunit | N | 0.004813 | Â | Â | Â | 3.74E-03 | 2.87E-02 | 4.17E-08 | 0.03547 |
Cluster_32 | 90 | MFS transporter | N | < 0.0005 | 2.75E-05 |  | 3.02E-02 | 6.11E-10 |  | 2.20E-22 | 3.23E-07 |
Cluster_52 | 64 | phage tail protein | N | < 0.0005 | 7.38E-17 | 5.85E-18 | 3.99E-18 | 6.09E-12 | 9.23E-13 | 3.88E-15 | 2.81E-24 |
Cluster_3844 | 64 | phage tail protein | N | < 0.0005 | 9.42E-10 | 3.59E-07 | 2.92E-06 | 1.13E-11 | 3.03E-13 | 1.04E-15 | 7.99E-18 |
Cluster_3925 | 70 | phage tail protein | N | 0.004785 | 2.93E-03 | Â | Â | 5.82E-10 | 3.01E-07 | 3.85E-23 | 7.85E-05 |
Cluster_4291 | 57 | phage tail protein I | Y | < 0.0005 |  |  | 3.10E-03 | 2.07E-07 | 3.77E-05 |  | 3.30E-05 |
Cluster_4292 | 57 | recombinase | Y | 0.01689 | 4.56E-03 | 8.03E-03 | 4.72E-03 | 6.89E-06 | 1.32E-06 | 1.01E-04 | 2.34E-06 |
Cluster_4306 | 52 | mercuric transport protein periplasmic component | N | 0.007786 | Â | 1.51E-08 | Â | 6.83E-05 | 8.67E-04 | Â | 3.06E-03 |
Cluster_4307 | 52 | mercuric transport protein | N | 0.002263 | 3.91E-07 | 7.08E-06 | 2.05E-07 | 5.77E-05 | 2.23E-04 | 1.57E-09 | 1.01E-06 |
Cluster_4308 | 53 | portal protein | Y | < 0.0005 | 2.37E-14 | 9.40E-09 | 2.38E-14 | 3.37E-14 |  |  | 2.66E-27 |
Cluster_4309 | 53 | hypothetical protein | Y | < 0.0005 | 1.72E-05 | 2.65E-03 |  | 1.63E-12 | 9.43E-08 |  | 4.90E-06 |
Cluster_4310 | 53 | DNA transfer protein | Y | 0.002031 | 1.30E-03 | 7.12E-04 | Â | 6.10E-08 | 2.54E-04 | 4.43E-05 | 1.73E-04 |
Cluster_4343 | 53 | RecBCD nuclease inhibitor | Y | < 0.0005 | 3.10E-05 | 2.10E-05 | 3.09E-06 | 4.82E-08 | 2.58E-06 | 1.16E-08 | 1.51E-06 |
Cluster_4344 | 53 | recombinase | Y | < 0.0005 |  | 1.05E-02 |  | 3.44E-02 | 2.66E-02 |  | 2.01E-04 |
Cluster_4345 | 53 | hypothetical protein | Y | < 0.0005 |  | 5.39E-04 | 5.88E-04 | 3.18E-07 | 2.55E-03 | 2.45E-09 | 4.45E-03 |
Cluster_4355 | 52 | phage tail protein | Y | < 0.0005 | 1.13E-09 | 7.64E-04 | 2.42E-06 | 3.57E-11 | 1.02E-03 |  | 3.51E-02 |
Cluster_4361 | 48 | peptidase | Y | < 0.0005 | 3.81E-09 |  | 3.92E-12 | 4.40E-04 | 3.19E-05 |  | 1.13E-07 |
Cluster_4432 | 48 | terminase | Y | < 0.0005 | 2.89E-11 | 3.68E-10 | 2.02E-09 | 1.67E-17 | 7.22E-08 | 1.55E-42 | 4.83E-46 |
Cluster_4484 | 49 | endonuclease | Y | < 0.0005 | 1.81E-17 | 2.25E-18 | 3.38E-14 | 2.63E-03 | 1.42E-03 | 8.97E-35 | 1.08E-36 |
Cluster_4488 | 40 | phage tail tape measure protein | Y | < 0.0005 | 2.99E-02 | 3.41E-03 | 1.81E-04 | 1.26E-04 | 6.51E-03 | 2.38E-17 | 1.73E-12 |
Cluster_4533 | 47 | phage portal protein | Y | < 0.0005 | 2.78E-10 | 6.75E-10 | 5.49E-09 | 5.22E-10 | 7.45E-04 | 9.57E-18 | 9.99E-18 |
Cluster_4534 | 47 | capsid protein | Y | 0.01974 | Â | Â | Â | 9.04E-09 | 3.53E-03 | 4.91E-09 | 2.78E-03 |
Cluster_4543 | 47 | baseplate assembly protein | Y | < 0.0005 | 2.80E-07 | 6.92E-18 | 4.96E-03 | 3.08E-19 | 5.29E-09 | 5.49E-03 | 1.26E-23 |
Cluster_4548 | 47 | phage tail tape measure protein | Y | 0.01543 | Â | Â | Â | 3.98E-03 | 3.09E-03 | 4.16E-04 | 1.25E-02 |
Cluster_4549 | 47 | phage tail protein | Y | 0.008323 | 3.81E-84 | 3.34E-76 | 4.42E-76 | 9.86E-40 | 1.45E-41 | 6.19E-30 | 4.44E-16 |
Cluster_4562 | 46 | acyltransferase | Y | < 0.0005 |  | 1.26E-06 | 3.40E-09 | 8.88E-09 | 4.05E-05 | 1.26E-11 | 4.13E-06 |
Cluster_4594 | 44 | coat protein | Y | < 0.0005 |  | 8.20E-94 | 2.62E-96 | 2.28E-24 | 1.67E-24 | 3.81E-31 | 2.22E-15 |
Cluster_4595 | 44 | endorhamnosidase | Y | < 0.0005 | 5.09E-12 | 2.93E-10 | 6.52E-12 | 4.87E-11 | 4.76E-12 | 5.27E-11 | 7.77E-15 |
Cluster_4658 | 31 | hypothetical protein | Y | < 0.0005 | 2.26E-06 | 2.30E-03 |  | 5.76E-04 | 1.95E-03 |  | 9.80E-04 |
Cluster_4805 | 37 | DNA-invertase | N | < 0.0005 | 2.98E-41 | 3.16E-35 | 5.25E-38 | 8.71E-15 | 2.73E-11 | 1.33E-12 | 8.88E-16 |
Cluster_4879 | 31 | DNA transfer protein | Y | 0.001663 | 8.93E-11 | 2.59E-05 | 2.43E-06 | 2.58E-13 | 2.32E-02 | 2.16E-09 | 1.82E-04 |
Cluster_5031 | 31 | protein NinG | Y | < 0.0005 | 2.85E-08 | 3.32E-09 |  | 8.24E-08 | 4.16E-08 | 1.95E-10 | 1.21E-09 |
Cluster_5479 | 19 | resolvase | Y | < 0.0005 | 3.90E-09 | 8.64E-07 | 4.57E-08 | 5.37E-10 | 9.25E-09 | 9.55E-07 | 6.43E-13 |
Cluster_5556 | 17 | replication of DNA | Y | < 0.0005 |  | 6.88E-30 | 1.04E-43 | 9.83E-28 |  | 4.13E-29 | 7.14E-79 |
Cluster_5572 | 16 | DNA methylase | Y | < 0.0005 | 4.00E-03 | 1.32E-03 |  | 9.25E-04 | 7.54E-05 | 3.24E-05 | 1.52E-03 |
Cluster_5598 | 15 | methyltransferase | Y | 0.00691 | 1.70E-02 | Â | 5.20E-03 | 2.55E-05 | Â | Â | 6.62E-05 |
Cluster_5601 | 15 | relaxase NikB | Y | < 0.0005 | 1.36E-08 | 3.65E-05 | 1.39E-08 | 9.80E-10 |  |  | 2.41E-15 |
Cluster_5602 | 15 | conjugal transfer protein TrbC | Y | 0.02477 | Â | Â | 6.49E-03 | 3.23E-04 | 4.18E-03 | Â | 2.77E-02 |
Cluster_5607 | 15 | hypothetical protein | Y | < 0.0005 | 3.06E-19 | 8.34E-20 | 3.60E-21 | 1.58E-17 | 2.82E-19 | 7.02E-17 | 1.11E-15 |
Cluster_5609 | 15 | conjugal transfer protein | Y | < 0.0005 |  | 1.98E-02 | 6.21E-04 | 2.37E-04 |  |  | 1.92E-05 |
Cluster_5640 | 15 | hypothetical protein | Y | 0.005552 | 3.33E-02 | 5.88E-03 | 3.31E-04 | 1.36E-02 | 6.51E-03 | 1.18E-04 | 5.09E-04 |
Cluster_6042 | 5 | oxaloacetate decarboxylase | N | < 0.0005 |  | 6.88E-03 | 2.66E-02 | 9.52E-05 |  |  | 1.27E-07 |