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Table 1 Accession numbers (NCBI BioProject), classification, locality, sequencing and assembly statistics, and HaMStR ortholog recovery (out of 1031) for newly generated transcriptomes

From: Improved phylogenomic sampling of free-living nematodes enhances resolution of higher-level nematode phylogeny

Accession number Name Locality Reads Bases sequenced Transcripts Min length Max length Mean length HaMStR orthologs
  Nematoda         
PRJNA506144 Anaplectus granulosus, Plectidae, Plectida Sweden, Stockholm city, soil (59.369243 N, 18.052779 E), ~50 individuals 8,455,308 963,909,283 83,260 201 5144 584 950
PRJNA506149 Bathylaimus sp., Tripyloididae, Enoplida Sweden, Gullmarn fjord, 53 m depth, mud (58° 15.73′ N, 11°26.10′ E), 19 individuals 13,286,382 1,434,917,329 31,155 201 3743 499 461
PRJNA506150 Euchromadora sp., Chromadoridae, Chromadorida Sweden, Gullmarn fjord, 53 m depth, mud (58° 15.73′ N, 11°26.10′ E), 39 individuals 13,097,922 1,414,602,399 75,347 201 8497 813 972
PRJNA506153 Odontophora sp., Axonolaimidae, Araeolaimida Sweden, Skagerrak near Hållö, 14–17 m depth, sand (58° 20.35′ N, 11° 12.70′ E), ~60 individuals 8,413,939 754,420,192 41,153 201 3546 454 687
SRR8943407 Oncholaimidae gen. sp., Enoplida Antarctica, Weddell Sea, 302 m depth (70° 53.52′ S, 11° 7.62′ W; PS96_163R), single individual 31,690,332 3,200,723,532 32,032 201 6985 576 565
PRJNA506154 Pontonema sp., Oncholaimidae, Enoplida Sweden, Skagerrak near Hållö, 14–17 m depth, sand (58° 20.35′ N, 11° 12.70′ E), one individual 13,873,087 1,498,310,184 12,797 201 4863 594 347
PRJNA506156 Symplocostoma sp., Enchelidiidae, Enoplida Sweden, Gullmarn fjord, 53 m depth, mud (58° 15.73′ N, 11°26.10′ E), 8 individuals 11,886,477 1,283,745,582 41,070 201 6051 556 378
SRR8943408 Thoracostomopsidae gen. sp., Enoplida Antarctica, Weddell Sea, 302 m depth (70° 53.52′ S, 11° 7.62′ W; PS96_156R), single individual 29,345,050 2,963,850,050 16,794 201 8302 614 254
PRJNA506158 Tobrilus sp., Tobrilidae, Triplonchida Sweden, Nacka, lake Källtorp, sandy sediment (59° 17.689′ N, 18° 09.608′ E), ~500 individuals 8,813,358 951,845,800 58,559 201 8807 774 999
  Nematomorpha         
SRR8943410 Gordius sp. USA, Virginia, Rockbridge County, pond (37° 46.74667′ N, 79° 29.78167′ W), piece of midbody of single individual 35,319,538 3,567,273,338 39,939 201 14,897 1064 937
  Kinorhyncha         
SRR8943409 Pycnophyes sp. Antarctica, Weddell Sea, 752.1 m depth (75° 51,14′ S, 032° 22,11′ W; PS96_1116R), single individual 27,441,206 2,771,561,806 85,908 201 10,886 547 563
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BMC Ecology and Evolution

ISSN: 2730-7182

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