A next generation approach to species delimitation reveals the role of hybridization in a cryptic species complex of corals

Table 2 Dongsha Atoll Sinularia. Loci and SNP summary statistics of pyRAD simulations at two different clustering thresholds (c), three different levels of taxon occupancy per locus (m), and two different levels of shared polymorphic sites (p). Minimum and maximum loci obtained for one individual are indicated as well as total loci obtained across all individuals. Total number of variable SNPs (Var), parsimony informative SNPs (PI), and unlinked bi-allelic SNPs (BI) are also included

(m)	(c)	Number of Loci						Number of SNPs
(m)	(c)	Min	Max	Total	Min	Max	Total	Var.	PI	BI	Var.	PI	BI
Clade 4			p10			p25			p10			p25
1.0	0.90	73	73	73	154	154	154	382	78	63	1,358	617	144
1.0	0.85	93	93	93	185	185	185	563	255	83	1,675	778	175
0.75	0.90	1,570	2,391	2,552	3,139	5,331	5,515	17,690	10,505	2,448	48,301	28,211	5,411
0.75	0.85	1,869	2,869	2,958	3,791	6,113	6,343	22,936	14,026	2,851	60,232	36,467	6,236
0.50	0.90	3,391	9,742	10,813	6,923	24,178	26,861	70,048	38,239	10,490	214,870	121,983	26,532
0.50	0.85	4,347	10,341	11,540	8,693	25,221	28,179	86,607	49,558	11,225	251,615	147,779	27,860
Clade 5C
1.0	0.90	115	115	115	143	143	143	885	212	104	1,222	356	132
1.0	0.85	123	123	123	154	154	154	908	229	109	1,325	385	140
0.75	0.90	2,500	4,174	4,306	4,060	6,675	7,083	52,325	31,844	4,276	91,810	57,263	7,051
0.75	0.85	2,781	4,793	4,968	4,491	7,771	8,060	62,057	38,113	4,930	106,548	66,726	8,022
0.50	0.90	6,210	11,587	13,189	9,439	20,926	23,946	171,091	104614	13141	329,837	205,990	23,898
0.50	0.85	5,381	11,697	13,281	9,329	20,582	23,484	175,558	108,258	13,225	327,211	205,557	23,428

ISSN: 2730-7182