Skip to main content
Fig. 2 | BMC Evolutionary Biology

Fig. 2

From: Evolution of CCL16 in Glires (Rodentia and Lagomorpha) shows an unusual random pseudogenization pattern

Fig. 2

Amino acid alignment of CCL16 for several mammalian species. The characteristic Cys Cys motif is boxed. (*) represent normal Stop codons; (−) represent indels; *1, *2 and *3 represent different alleles. Human (Homo sapiens_NM_004590.3); Leporids: European rabbit (Oryctolagus cuniculus cuniculus _MK305138 and O. c. algirus_MK305139, MK305140), riverine rabbit (Bunolagus monticularis_MK305141), amami rabbit (Pentalagus furnessi_MK305136), pygmy rabbit (Brachylagus idahoensis_MK305131, MK305132), Mexican cottontail (Sylvilagus cunicularis_MK305145), forest cottontail (S. brasiliensis_MK305143, MK305144), Eastern cottontail (S. floridanus_MK305146, MK305147), European brown hare (Lepus europaeus_MK305133, MK305134), Iberian hare (L. granatensis_MK305135), volcano rabbit (Romerolagus diazi_MK305142); Ochotona species: American pika (Ochotona princeps_MK305156, MK305148, MK305149), Northern pika (O. hyperborean_MK305150), manchurian pika (O. mantchurica_MK305151), steppe pika (O. pusilla_MK305152), Hoffmann’s pika (O. hoffmanni_ MK305155, MK305137), Palla’s pika (O. pallasi_ MK305153), turuchan pika (O. turuchanensis_MK305154); Rodents: golden hamster (Mesocricetus auratus_XM_013118284.1), Chinese hamster (Cricetulus griseus_XM_007610472.2), lesser Egyptian jerboa (Jaculus jaculus_XM_012950139.1), Ord’s kangaroo rat (Dipodomys ordii_XM_013013071.1), guinea pig (Cavia porcellus_XM_005008470.1), degu (Octodon degus_XM_004643051.1), long tailed chinchilla (Chinchilla lanigera_XM_005415289.2), naked mole-rat (Heterocephalus glaber_XM_004870664.2), damara mole-rat (Fukomys damarensis_XM_010621757.1), thirteen-lined ground squirrel (Ictidomys tridecemlineatus_XM_005321496.2), sunda flying lemur (Galeopterus variegatus_XM_008563956.1); cattle (Bos Taurus_XM_010798179.1); lesser hedgehog tenrec (Echinops telfairi_XM_004707357.1); horse (Equus caballus_XM_001917910.4); Arabian camel (Camelus dromedaries_XM_010990504.1); killer whale (Orcinus orca_XM_004271818.2); European hedgehog (Erinaceus europaeus_XM_007516987.2); common shrew (Sorex araneus_XM004608852.1); large flying fox (Pteropus vampyrus_XM_011379364.1); cat (Felis catus_XM_006940098.1); African bush elephant (Loxodonta Africana_XM_010594587.1); Chinese tree shrew (Tupaia belangeri chinensis_XM_006154411.2); Florida manatee (Trichechus manatus latirostris_XM_004385436.1); nine-banded armadillo (Dasypus novemcinctus_XM_004449436.2); nancy Ma’s night monkey (Aotus nancymaae_XM_012445567.1); gray mouse lemur (Microcebus murinus_XM012783454.1); dog (Canis lupus familiaris_XM_537724.5). Numbering is according to human CCL16 sequence (GenBank accession number: NM_004590.3), with signal peptide and indels (indicated as (−)) being included in the numbering

Back to article page