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Table 1 Genes in DRs

From: Patterns of genomic differentiation between two Lake Victoria cichlid species, Haplochromis pyrrhocephalus and H. sp. ‘macula’

DRs

Gene name

Predicted functions related to adaptation and speciation c

DR1a

diaphanous

Developmental process, cell movement, auditory

DR2a

ventral anterior homeobox 2

Development of retina

DR3a

prostaglandin d2 receptor 2

Unknown

 

G-protein coupled receptor 4 (GPR4)

Adaptive to different oxygen concentration

 

UDP-glucuronosyltransferase 2b15

Unknown

DR4

hemicentin-1

Unknown

DR5a

long wavelength-sensitive opsin (LWS)

Speciation by sensory drive

DR6a

netrin receptor UNC5c

Brain development

DR7

general transcription factor IIH subunit 1

Unknown

DR8a

intestinal mucin

Host-specific microbiota composition

DR9a

hepatocyte growth factor receptor

Morphogenesis for the muscles of fins, affecting mobility

DR10a

tbx3b (30 kb downstream from DR10)

Developmental process

DR11a

ap-4 complex subunit epsilon

Unknown

 

cytochrome p450 aromatase type II

Sexual differentiation of the brain and reproductive behavior

 

gliomedin

Unknown

DR12a

melanopsin A

Photic regulation of circadian clocks

DR13

No gene

DR14

Uncharacterized protein

 

Uncharacterized protein

DR15

Uncharacterized ncRNA

DR16a

aryl hydrocarbon receptor nuclear translocator

Adaptive to different oxygen concentrations

DR17

UDP-n-acetylglucosamine transporter

Unknown

 

U3 small nucleolar ribonucleoprotein protein imp3

Unknown

DR18a

peptidyl-prolyl cis-trans isomerase H

Unknown

 

transcription initiation factor TFIID subunit 10

Early embryonic development

 

G-protein coupled receptor 160

Unknown

DR19a

type II cytoskeletal 5

Epidermis development

DR20a

hydroperoxide isomerase aloxe3

Epidermis development

 

macrophage mannose receptor 1

Unknown

DR21a

Ras-related protein rab-11a

Unknown

 

RNA-binding protein mex3a

Brain aging

  1. aDRs contained genes with predicted roles for adaptation and speciation
  2. bThis DR did not contain a gene, but tbx3 was located 30 kbp downstream from this DR
  3. cReferences are listed in Additional file 6: Table S1