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Table 1 The list of species and strains included in this study, with reference to the identification number of the proteome and the organism in the UniProt database, as well as the number of proteins annotated

From: Phyloproteomic and functional analyses do not support a split in the genus Borrelia (phylum Spirochaetes)

Organism

Group

Proteome ID

Organism ID

Protein count

Borrelia afzelii (strain PKo)

Lb

UP000005216

390,236

1394

Borrelia anserina

Rf

UP000019262

1,313,293

855

Borrelia bavariensis (Strain: ATCC BAA-2496 / DSM 23469 / PBi)

Lb

UP00000276

290,434

1262

Borrelia bissettiae (Strain: CO275)

Lb

UP000183624

64,897

1794

Borrelia bissettiae (Strain: DN127)

Lb

UP000001634

521,010

1403

Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)

Lb

UP000001807

224,326

1290

Borrelia burgdorferi (strain ZS7)

Lb

UP000006901

445,985

1223

Borrelia burgdorferi 64b

Lb

UP000006162

498,740

1518

Borrelia coriaceae Co53

Rf

UP000019330

1,313,292

895

Borrelia crocidurae (strain Achema)

Rf

UP000005212

1,155,096

1469

Borrelia crocidurae DOU

Rf

UP000000612

1,293,575

845

Borrelia duttonii (strain Ly)

Rf

UP000000611

412,419

1287

Borrelia duttonii CR2A

Rf

UP000019148

1,432,657

1995

Borrelia garinii PBr

Lb

UP000006103

498,743

1346

Borrelia hermsii (Strain: DAH-2E7)

Rf

UP000075229

140

1230

Borrelia hermsii MTW

Rf

UP000019324

1,313,291

840

Borrelia mayonii (Strain: MN14–1539)

Lb

UP000185492

1,674,146

1131

Borrelia miyamotoi (Strain: CT13–2396)

Rf

UP000176410

47,466

1079

Borrelia miyamotoi FR64b

Rf

UP000019332

1,292,392

874

Borrelia parkeri SLO

Rf

UP000019331

1,313,294

873

Borrelia recurrentis (strain A1)

Rf

UP000000612

412,418

977

Borrelia turicatae (strain 91E135)

Rf

UP000019262

1,313,293

855

Borreliella chilensis (Strain: VA1)

Lb

UP000030940

1,245,910

898

Borreliella finlandensis (Strain: SV1)

Lb

UP000006166

498,741

1300

Borreliella spielmanii A14S

Lb

UP000003481

498,742

1297

Borreliella valaisiana VS116

Lb

UP000006163

445,987

1349

Brachyspira hyodysenteriae (strain ATCC 49526 / WA1)

LTB

UP000001803

565,034

2642

Brachyspira pilosicoli B2904

LTB

UP000007346

1,133,568

2637

Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)

LTB

UP000001847

456,481

3723

Leptospira borgpetersenii str. 200,701,203

LTB

UP000011783

1,193,007

4773

Leptospira interrogans serovar Lai

LTB

UP000001408

57,678

3676

Sediminispirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228)

FL

UP000002318

573,413

4211

Sphaerochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1)

FL

UP000007939

760,011

1819

Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy)

FL

UP000008466

158,189

3007

Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes)

FL

UP000005632

158,190

3150

Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692)

FL

UP000007383

889,378

2766

Spirochaeta lutea

FL

UP000029692

1,480,694

2285

Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1)

FL

UP000001296

665,571

2199

Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222)

LTB

UP000008212

243,275

2753

Treponema maltophilum ATCC 51939

LTB

UP000014541

1,125,699

2287

Treponema pallidum (strain Nichols)

LTB

UP000000811

243,276

1028

  1. The organisms are alphabetically sorted and are included according to its standard denomination in UniProt. The column “group” indicates the four main groups of taxa considered in this study: Rf relapsing fever species of Borrelia, Lb Lyme borreliosis group of Borrelia spp., FL free-life species, LTB parasitic species without vector