Table 3 Aminoacidic motifs for the identification on plant PAOs subfamilies
From: Defining novel plant polyamine oxidase subfamilies through molecular modeling and sequence analysis
Fitness | Hits (Seqs) | Motif | |
|---|---|---|---|
Subfamily 1 | 169,4 | 32 (32) | EFF[IM]YAH[DE][QR]RGY[FY][AT]FWQxM[DE]NA[HY]xGS[DN][IM]LVVT[LV]TN[DEG][EQ]Sx[HR][IV]E[ANS]Qx[DN]x[DE]T[LM] |
Subfamily 2 | 134,0 | 37 (37) | T[DEK][IV]xV[LP]RWxS[DN][KR]F[FY]xG[ST][FY]SNxP[IV]GV[DNS][HR]x[EGQ][FHY][DN]x[IL][KR]APVGx(3)[FY]x[GT][EG][EH]x[ST][AEQS] |
Subfamily 3 | 112,8 | 43 (43) | V[FV]E[AG]G[ADGNST]R[AIV]GGR[IV]x[ST]x[EQ]Fx[AGS]x(2)[IV]ExGATW[IV]xGx(1,2)Gx(1,2)P[ILV][HY]x[ILM][AS]x[DEQ]x(3)[FL] |
Subfamily 4 | 125,1 | 136 (136) | LHG[AV][CGS]x[DE]N[PS][LV][AS]x(2)Ix(2)LxLx[IL]YxT[CGS]x[DG][DN]S[IV][IL][FY][DE]HDL[EK]Sx(2)[IL][FY][DN]x(2)Gx(2)[IV][EPS] |