Table 1 PhyloBayes model parameters tested in this study. For each model, a +/− indicates the presence or absence of a condition. Sequence data were used to generate posterior probability distributions for all models, which were also tested under the prior by removing sequence data (−prior flag in PhyloBayes as indicated by a "p"). BD refers to birth-death. LN stands for lognormal autocorrelated. UGAM stands for uncorrelated gamma multipliers. The AB split refers to the split between Ascomycota and Basidiomycota. Fossil refers to the fossil minimum referenced in the Calibration Table (Table 2)
From: Paleozoic diversification of terrestrial chitin-degrading bacterial lineages
Prior | Relaxed Clock Model | Calibrations | |||||||
|---|---|---|---|---|---|---|---|---|---|
Model | Uniform | BD | LN | UGAM | Root | AB split | A crown, B crown | Fossil | -prior |
1 | + | – | + | – | + | + | – | – | – |
2 | + | – | + | – | + | + | + | – | – |
3 | + | – | + | – | + | – | – | + | – |
4 | + | – | + | – | + | – | + | + | – |
1p | + | – | + | – | + | + | – | – | + |
2p | + | – | + | – | + | + | + | – | + |
3p | + | – | + | – | + | – | + | + | + |
4p | + | – | + | – | + | – | – | + | + |
5 | + | – | – | + | + | + | – | – | – |
6 | + | – | – | + | + | + | + | – | – |
7 | + | – | – | + | + | – | + | + | – |
8 | + | – | – | + | + | – | – | + | – |
5p | + | – | – | + | + | + | – | – | + |
6p | + | – | – | + | + | + | + | – | + |
7p | + | – | – | + | + | – | + | + | + |
8p | + | – | – | + | + | – | – | + | + |
9 | – | + | – | + | + | + | – | – | – |
10 | – | + | – | + | + | + | + | – | – |
11 | – | + | – | + | + | – | + | + | – |
12 | – | + | – | + | + | – | – | + | – |
9p | – | + | – | + | + | + | – | – | + |
10p | – | + | – | + | + | + | + | – | + |
11p | – | + | – | + | + | – | + | + | + |
12p | – | + | – | + | + | – | – | + | + |
13 | – | + | + | – | + | + | – | – | – |
14 | – | + | + | – | + | + | + | – | – |
15 | – | + | + | – | + | – | + | + | – |
16 | – | + | + | – | + | – | – | + | – |
13p | – | + | + | – | + | + | – | – | + |
14p | – | + | + | – | + | + | + | – | + |
15p | – | + | + | – | + | – | + | + | + |
16p | – | + | + | – | + | – | – | + | + |