Skip to main content

Table 3 Cysteine patterns of the different three-LU domain predicted proteins found in non-mammalian vertebrates

From: Origin and diversification of the plasminogen activation system among chordates

Animal group

Species

auPAR BRBH

bOther three-LU

Ray-finned fishes

Lates calcarifer

10–10-10e

No

Lungfish

c Protopterus sp f

10–10-10

10–10-10

Nanorana parkerii

10–10-11d

No

Xenopus tropicalis

10–10-11d

No

Amphibians

Xenopus laevis e

8–10-10-longd

10–10-10d and 10–10-11d

c Ambystoma mexicanum f

8–8-10

8–10-10-long, 10–10-1 and 10–10-11

Tylototriton wenxianensiss f

10–10

8–10-10-long, 10–10-11 and 10–10-11

 

c Anolis carolinensis

8–10-10d

8–10-10-longd

Lizards & Snakes

c Gekko japonicus

8–10-10d

No

c Protobothrops mucrosquamatus

8–10-10d

No

c Python bivittatus

8–10-10

8–10-10-long and 10–8-10

Turtles

c Trachemys scripta f

8–10-10

No

Crocodilians

c Alligator mississippiensis

8–10-10g

8–10-10-long and 10–8-10

  1. aBest hit to human uPAR
  2. bOther predicted peptides with three LU (Ly6/uPAR) domains
  3. cSpecies with intact EGF in uPA
  4. dGene located in the same scaffold as at least one of ETHE1, XRCC1, PHLDB, LYPD3 or LYPD5
  5. eGene not located in the same scaffold as ETHE1, XRCC1, PHLDB, LYPD3 or LYPD5
  6. fGenome assembly not available for that species
  7. gPredicted protein obtained after merged two overlapping contigs from two different databases (see Additional file 2)