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Table 1 Genome databases, assembly versions and Hox scaffolds used in this study

From: Two more Posterior Hox genes and Hox cluster dispersal in echinoderms

Species Phylum/Class Genome version Database Hox cluster scaffold(s) Hox11/13d scaffold(s) Hox11/13e scaffold(s) Citations
Anneissia japonica Echinodermata / Crinoidea unassembled reads NCBI SRA N/A N/A N/A None
Lytechinus variegatus Echinodermata / Echinoidea 2.2 Echinobase 2296, 638, 378, 5296, 1336, 14,399, 33,366, 12,176, 234,558, 41,337, 1680 9600 2271 None
Strongylocentrotus purpuratus Echinodermata / Echinoidea 4.2 Echinobase 628 1168 182 5
Acanthaster planci Echinodermata / Asteroidea 1.0 NCBI genomes 15 8 22 10
Patiria miniata Echinodermata / Asteroidea 2.0 Echinobase 2763, 4440, 5928, 12,174, 1848, 3114 11,036 7732 None
Apostichopus japonicus Echinodermata / Holothuroidea 1.0 from [12] Genedatabase.cn 420 872 72 11, 12
Parastichopus parvimensis Echinodermata / Holothuroidea 1.0 Echinobase 391, 3188, 498, 1495, 4722, 3261, 5822, 317 4213 928 None
Ophiothrix spiculata Echinodermata / Ophiuroidea 1.0 (contigs) Echinobase 2313, 14,601, 543, 145, 887, 4941, 67,114, 5877, 10,227, 4461, 7983 764, 3374 21,026, 16,603 None
Ptychodera flava Hemichordata / Enteropneusta 3.0 OIST 4932_cov136 N/A N/A 31
Saccoglossus kowalevskii Hemichordata / Enteropneusta 1.0 NCBI genomes 16,417, 1507, 26,913 N/A N/A 31
  1. We accessed databases through the following resources: NCBI genome portal and genomic BLAST [57], NCBI sequence read archive (SRA, [58]), Echinobase [28], the Apostichopus japonicus genome database [59] and the OIST Marine Genomics Portal [60]. Species used for neighbour analysis are indicated in bold italic