A practical implementation of large transcriptomic data analysis to resolve cryptic species diversity problems in microbial eukaryotes

Table 2 Average distances of potential barcode markers present in the transcriptomes of all analyzed isolates. Twelve selected potential barcoding markers, identity and their intra- and inter-specific distances

Cluster	Accession #s	Gene name	C pen	C min	C pen C min	C min C minut	E zon PRA-191	E zon PRA-191 LINKS	UK-YT1 RHP1–1
2785	XP_004353437 XP_638491	Signalosome complex protein	0	0	0	7.5	0.1	11.1	0.2
2836	XP_004356442 XP_640858	Proteasome alpha subunit C	0	0	0	11.0	1.7	14.7	0.1
2840	XP_004344004 XP_637130	Phosphoglycerate kinase	0	0	0	13.0	0.4	15.0	0
3192	XP_004368096 XP_642255	Ribulosephosphate 3-epimerase	0.3	0	0.1	12.0	0.4	13.0	0.2
3202	XP_004368095 XP_646606	Proteasome 26S subunit	0	0	0	9.4	0	12.5	0.1
3401	XP_004341728 XP_628938	COP9 signalosome complex	0	0	0	6.3	0.2	14.5	0.2
3510	XP_004341817 XP_646323	Fructose-1,6-bisphosphatase	0	0	0.2	16.3	0.1	14.0	0
3691	XP_004336605 XP_629938	ATP-dependent RNA helicas	0.2	0	0.1	7.8	0	15.0	0
3965	XP_004353478 XP_640508	rRNA PÍseudouridine synthase	0	0.2	0.1	13.2	0.1	12.0	1.2
3986	XP_004336278 XP_628968	Proteasome/cyclosome	0	0	0.02	9.9	0	16.5	0.04
4056	XP_004338975 XP_636972	Proteasome 26S subunit	0	0.04	0.03	11.6	0	14.4	0.03
4574	XP_004335206 XP_643167	NAD-dependent epimerase/dehydratase	0.1	0	0.3	9.6	0.1	15.5	0

Abbreviations: C pen C. pentatrifurcatum, C min C. minus, C minut C. minutoidum, E zon E. zonatum, UK-YT1 Thecamoebida sp., RHP1–1 Thecamoebida sp

ISSN: 2730-7182