Cytonuclear diversity and shared mitochondrial haplotypes among Daphnia galeata populations separated by seven thousand kilometres

Yin, Mingbo; Wang, Xiaoyu; Ma, Xiaolin; Gießler, Sabine; Petrusek, Adam; Griebel, Johanna; Hu, Wei; Wolinska, Justyna

doi:10.1186/s12862-018-1256-4

Table 1 Genetic diversity of Daphnia galeata populations from Eastern China and Central Europe, based on 15 microsatellite loci and a mitochondrial gene (for 12S rRNA)

From: Cytonuclear diversity and shared mitochondrial haplotypes among Daphnia galeata populations separated by seven thousand kilometres

	Locality (abbreviation), habitat type, country	Sampling period	Latitude, longitude	Microsatellites					12S
	Locality (abbreviation), habitat type, country	Sampling period	Latitude, longitude	N_mic	N_MLG	MLG	R	A _r	N_seq	N_hapl	h	π	haplotypes (N_ident)
Europe	Ammersee (AMME)^a, natural lake, DE	Autumn 2008	48°02′, 11°42′	12	12	11	0.91	2.57	n.a.
	Böhmerweiher (BOHM)^c, small flooded gravel pit, DE	Spring 2008	48°10′, 11°22′	n.a.					13	3	0.29	0.00067	CES (11), BOHMa (1), BOHMb (1)
	Fasanariesee (FASA), small flooded gravel pit, DE	Spring 2011	48°12′, 11°31′	43	41	17	0.40	2.30	10	1	0	0	CES (10)
	Feldmochinger See (FELD), small flooded gravel pit, DE	Spring 2009	48°07′, 11°18′	46	44	33	0.74	2.29	10	1	0	0	CES (10)
	Feringasee (FERI)^a,c, small flooded gravel pit, DE	Spring 2009	48°07′, 11°24′	32	31	31	1	2.80	19	3	0.20	0.00071	ESa (17), FERIa (1), FERIb (1)
	Greifensee (GREI), natural lake, CH	Spring 2002	47°20′, 08°40′	36	35	21	0.59	3.49	10	2	0.53	0.00232	CES (6), ESb (4)
	Goslawskie (GOSL), natural lake, PL	Spring 2014	52°18′, 18°15′	43	36	31	0.86	4.25	10	2	0.36	0.00232	ESb (2), GOSLa (8)
	Heimstettener See (HEIM)^a, small flooded gravel pit, DE	Spring 2008	48°06′, 11°26′	46	43	43	1	3.06	n.a.
	Lerchenauer See (LERC), small flooded gravel pit, DE	Spring 2011	48°12′, 11°32′	45	44	31	0.70	3.07	10	1	0	0	CES (10)
	Lußsee (LUSS), small flooded gravel pit, DE	Spring 2008	49°12′, 11°25′	n.a.					12	2	0.17	0.00037	CES (11), LUSSa (1)
	Mueggelsee (MUEG), natural lake, DE	Spring 2016	52°26′, 13°38′	46	46	32	0.69	3.74	10	3	0.51	0.00385	ESa (7), ESb (2), MUGGa (1)
	Římov (RIM), man-made reservoir, CZ	Autumn 2009	48°50′, 14°30′	46	46	31	0.67	3.40	n.a.
	Vír (VIR), man-made reservoir, CZ	Autumn 2009	49°34′, 16°19′	46	16	15	0.93	3.71	10	3	0.38	0.00174	CES (8), ESa (1), ESb (1)
	Želivka (ZEL), man-made reservoir, CZ	Summer 2009	49°43′, 15°06′	42	35	31	0.88	4.11	10	3	0.51	0.00358	CES (1), ESa (2), ESb (7)
China	Baoying Hu (BYH)^b,d, natural lake	Spring 2012	33°06′, 119°08′	39	34	34	1	3.75	10	2	0.20	0.00218	HS1 (9), CES (1)
	Hewangba Reservoir (HWB)^b, man-made reservoir	Spring 2013	32°32′, 118°50′	40	35	17	0.47	2.37	10	3	0.51	0.00121	HS1 (7), HWBa (2), HWBb (1)
	Hung-tse Lake (HZH)^b,d, natural lake	Spring 2012	33°13′, 118°18′	44	40	29	0.72	3.08	10	1	0	0	HS1 (10)
	Jinniushan Reservoir (JNS)^b, man-made reservoir	Spring 2013	32°28′, 118°57′	42	37	18	0.47	2.24	10	2	0.53	0.00116	HS1 (4), HS4 (6)
	Luoma Hu (LMH)^b,d, natural lake	Autumn 2012	34°07′, 118°11′	43	33	33	1	3.17	10	2	0.53	0.00116	HS1 (6), HS4 (4)
	Shanhu Reservoir (SHR)^b, man-made reservoir	Spring 2013	32°26′, 118°47′	22	17	17	1	2.50	10	1	0	0	HS1 (10)
	Zaolin Reservoir (ZLR)^b, man-made reservoir	Spring 2013	32°20′, 119°04′	42	34	31	0.91	2.50	10	1	0	0	HS1 (10)
	Zhongshan Reservoir (ZSR)^b,d, man-made reservoir	Autumn 2012	31°37′, 119°04′	41	34	22	0.64	2.30	10	1	0	0	HS1 (10)
	Li Hu (LIH), natural lake	Spring 2012	31°19′, 120°09′	40	34	34	1	3.73	10	5	0.84	0.00741	HS1 (3), CES (3), LIHa (1), LIHb (1), LIHc (2)
	Qinyun Hu (QYH)^d, man-made reservoir	Spring 2012	35°54′, 117°48′	37	33	25	0.75	2.65	10	2	0.36	0.00387	HS1 (2), CES (8)
	Jingdong Reservoir (JDR)^d, man-made reservoir	Spring 2012	35°57′, 117°48′	45	24	11	0.43	2.20	10	1	0	0	HS1 (10)
	Ying Hu (YIH)^d, man-made reservoir	Autumn 2012	32°37′, 108°54′	44	26	21	0.80	3.06	10	3	0.62	0.00465	HS1 (6), HS4 (2), CES (2)
	Dongzhang Reservoir (DZR), man-made reservoir	Spring 2013	25°42′, 119°16′	42	22	13	0.57	1.34	10	1	0	0	HS1 (10)

Microsatellite data published in: ^a [24], ^b [19]. 12S data published in: ^c [42], ^d [15]. N_mic number of genotyped individuals, N_MLG number of genotyped individuals with a complete multilocus genotype (MLG), MLG number of detected multilocus genotypes, R relative clonal richness, A_r allele richness, n.a. data not available, N_seq number of sequenced individuals, N_hapl number of haplotypes per lake, h haplotype diversity per lake, π nucleotide diversity per lake, N _ident a number in brackets indicates number of individuals possessing the identical sequence. Haplotype ID: CES: haplotype shared by China and Europe; ES: haplotypes shared among European populations; HS: haplotypes shared among Chinese populations (IDs are consistent with [15]). Countries are indicated by two-letter ISO codes in the second column

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ISSN: 2730-7182

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